Examples of edu.ucla.sspace.common.ArgOptions.addOption()

edu.ucla.sspace.common.ArgOptions.addOption()
Creates an option that is in the default group and takes no values and adds to the set of possible options. @param shortName a one character short name for specify this option. @param longName a string name for specifying this option. @param description an optional descritpion for this option, or {@code null} if no description is to be provided. @throws IllegalArgumentException if
- If another option witheither the same {@code shortName} or the same {@code longName}has been already been added.
- longName has length 1.

        Logger.getLogger(FanmodTool.class.getName());


    public static void main(String[] args) {
        ArgOptions opts = new ArgOptions();
        
        opts.addOption('h', "help", "Generates a help message and exits",
                          false, null, "Program Options");
        opts.addOption('v', "verbose", "Turns on verbose output",
                          false, null, "Program Options");
        opts.addOption('V', "verbVerbose", "Turns on very verbose output",
                          false, null, "Program Options");

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    public static void main(String[] args) {
        ArgOptions opts = new ArgOptions();
        
        opts.addOption('h', "help", "Generates a help message and exits",
                          false, null, "Program Options");
        opts.addOption('v', "verbose", "Turns on verbose output",
                          false, null, "Program Options");
        opts.addOption('V', "verbVerbose", "Turns on very verbose output",
                          false, null, "Program Options");


        opts.addOption('r', "randomGraphs", "The number of random graphs" +

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        opts.addOption('h', "help", "Generates a help message and exits",
                          false, null, "Program Options");
        opts.addOption('v', "verbose", "Turns on verbose output",
                          false, null, "Program Options");
        opts.addOption('V', "verbVerbose", "Turns on very verbose output",
                          false, null, "Program Options");


        opts.addOption('r', "randomGraphs", "The number of random graphs" +
                       " to use for the null model (default: 1000)",
                       true, "INT", "Algorithm Options");

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        opts.addOption('v', "verbose", "Turns on verbose output",
                          false, null, "Program Options");
        opts.addOption('V', "verbVerbose", "Turns on very verbose output",
                          false, null, "Program Options");


        opts.addOption('r', "randomGraphs", "The number of random graphs" +
                       " to use for the null model (default: 1000)",
                       true, "INT", "Algorithm Options");
        opts.addOption('z', "motifSize", "The number of vertices in the" +
                       " identified motifs (default: 3)",
                       true, "INT", "Algorithm Options");

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                          false, null, "Program Options");


        opts.addOption('r', "randomGraphs", "The number of random graphs" +
                       " to use for the null model (default: 1000)",
                       true, "INT", "Algorithm Options");
        opts.addOption('z', "motifSize", "The number of vertices in the" +
                       " identified motifs (default: 3)",
                       true, "INT", "Algorithm Options");
        opts.addOption('s', "useSimpleMotifs", "If searching for motifs in a " +
                       "multigraph, counts only simple graphs as motifs",
                       false, null, "Algorithm Options");

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                       " to use for the null model (default: 1000)",
                       true, "INT", "Algorithm Options");
        opts.addOption('z', "motifSize", "The number of vertices in the" +
                       " identified motifs (default: 3)",
                       true, "INT", "Algorithm Options");
        opts.addOption('s', "useSimpleMotifs", "If searching for motifs in a " +
                       "multigraph, counts only simple graphs as motifs",
                       false, null, "Algorithm Options");


        opts.addOption('Z', "minZScore", "The minimum Z-Score for any motif" +
                       " in the original network to be used for computing " +

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                       true, "INT", "Algorithm Options");
        opts.addOption('s', "useSimpleMotifs", "If searching for motifs in a " +
                       "multigraph, counts only simple graphs as motifs",
                       false, null, "Algorithm Options");


        opts.addOption('Z', "minZScore", "The minimum Z-Score for any motif" +
                       " in the original network to be used for computing " +
                       "modularity (default: 1)",
                       true, "DOUBLE", "Algorithm Options");
        opts.addOption('O', "minOccurrences", "The minimum number of occurrences"
                       + " for any motif" +

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        opts.addOption('Z', "minZScore", "The minimum Z-Score for any motif" +
                       " in the original network to be used for computing " +
                       "modularity (default: 1)",
                       true, "DOUBLE", "Algorithm Options");
        opts.addOption('O', "minOccurrences", "The minimum number of occurrences"
                       + " for any motif" +
                       " in the original network to be used for computing " +
                       "modularity (default: 1)",
                       true, "INT", "Algorithm Options");

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                       true, "INT", "Algorithm Options");




//         opts.addOption('w', "weighted", "Uses a weighted edge simiarity",
//                           false, null, "Input Options");
        opts.addOption('d', "loadAsDirectedGraph", "Loads the input graph as " +
                       "a directed graph",
                       false, null, "Input Options");
        opts.addOption('m', "loadAsMultigraph", "Loads the input graph as " +
                       "a multigraph",
                       false, null, "Input Options");

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 */
public class MatrixConverter {


    public static void main(String[] args) throws IOException {
        ArgOptions options = new ArgOptions();
        options.addOption('i', "inputFormat",
                          "the matrix format of the input matrix",
                          true, "STRING", "Required");
        options.addOption('o', "ouputFormat",
                          "the matrix format of the output matrix",
                          true, "STRING", "Required");

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