Examples of ucar.nc2.ft.point.standard.JoinMuiltdimStructure

ucar.nc2.units.DateFormatter
Join data from a row of a Structure, whose index is passed in as recnum[0] / dimLen @author caron @since May 29, 2009

    }
  }


  static private NetcdfFile acquireRemote(FileCache cache, FileFactory factory, Object hashKey,
                                          String location, int buffer_size, ucar.nc2.util.CancelTask cancelTask, Object spiObject) throws IOException {
    if (cache == null) return new CdmRemote(location);


    if (factory == null) factory = new RemoteFactory();
    return (NetcdfFile) cache.acquire(factory, hashKey, location, buffer_size, cancelTask, spiObject);
  }

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    return (NetcdfFile) cache.acquire(factory, hashKey, location, buffer_size, cancelTask, spiObject);
  }


  static private class RemoteFactory implements FileFactory {
    public NetcdfFile open(String location, int buffer_size, ucar.nc2.util.CancelTask cancelTask, Object spiObject) throws IOException {
      return new CdmRemote(location);
    }

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      return acquireRemote(cache, factory, hashKey, location, buffer_size, cancelTask, spiObject);  // open through ncstream


      // thredds:
    } else if (location.startsWith(ThreddsDataFactory.SCHEME)) {
      Formatter log = new Formatter();
      ThreddsDataFactory tdf = new ThreddsDataFactory();
      NetcdfFile ncfile = tdf.openDataset(location, false, cancelTask, log); // LOOK acquire ??
      if (ncfile == null)
        throw new IOException(log.toString());
      return ncfile;


    } else if (location.endsWith(".xml") || location.endsWith(".ncml")) { //open as a NetcdfDataset through NcML

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    taxis.addAttribute( new Attribute(_Coordinate.AxisType, AxisType.Time.toString()));
    double [] tdata = new double[1];
    tdata[0] = cal.getTimeInMillis();
    Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] {1}, tdata);
    taxis.setCachedData( dataA, false);
    DateFormatter formatter = new DateFormatter();
    taxis.addAttribute( new Attribute("units", "msecs since "+formatter.toDateTimeStringISO(new Date(0))));
    ncfile.addVariable(null, taxis);


    //att = new Attribute( "Time", dstring);
    //this.ncfile.addAttribute(null, att);
    this.ncfile.addAttribute(null, new Attribute("time_coverage_start", dstring));

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        taxis.addAttribute(new Attribute(_Coordinate.AxisType, AxisType.Time.toString()));
        double[] tdata = new double[1];
        tdata[0] = cal.getTimeInMillis();
        Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{1}, tdata);
        taxis.setCachedData(dataA, false);
        DateFormatter formatter = new DateFormatter();
        taxis.addAttribute(new Attribute("units", "msecs since " + formatter.toDateTimeStringISO(new Date(0))));
        ncfile.addVariable(null, taxis);
        //  Get dimensions
        Integer ni = new Integer(geoSatelliteSecondHeader.widthOfImage);
        att = new Attribute("NX", ni);
        this.ncfile.addAttribute(null, att);


        ni = new Integer(geoSatelliteSecondHeader.heightOfImage);
        att = new Attribute("NY", ni);
        this.ncfile.addAttribute(null, att);


        vname = getGeoSatelliteProductName(geoSatelliteSecondHeader.channel);
        if (vname == null)
          throw new UnsupportedDatasetException("Unsupported GeoSatellite Procuct Dataset");




        // set projection attribute
        // ? which projection
        ProjectionImpl projection = null;
        double dxKm = 0.0, dyKm = 0.0;
        short nv = geoSatelliteSecondHeader.flagOfProjection;
        att = new Attribute("ProjIndex", nv);
        this.ncfile.addAttribute(null, att);
        int proj = nv;
        if (proj == 2) {
          att = new Attribute("ProjName", "MERCATOR");
          double lat0 = geoSatelliteSecondHeader.centerLatitudeOfProjection;
          double lon0 = geoSatelliteSecondHeader.centerLongitudeOfProjection;
          double par = geoSatelliteSecondHeader.standardLatitude1;
          dxKm = geoSatelliteSecondHeader.horizontalResolution;
          dyKm = geoSatelliteSecondHeader.verticalResolution;
          projection = new Mercator(lon0, par);
        } else if (proj == 1) {
          att = new Attribute("ProjName", "LAMBERT_CONFORNAL");
          double lat0 = geoSatelliteSecondHeader.centerLatitudeOfProjection;
          double lon0 = geoSatelliteSecondHeader.centerLongitudeOfProjection;
          double par1 = geoSatelliteSecondHeader.standardLatitude1;
          double par2 = geoSatelliteSecondHeader.standardLatitude2;
          dxKm = geoSatelliteSecondHeader.horizontalResolution / 100;
          dyKm = geoSatelliteSecondHeader.verticalResolution / 100;
          projection = new LambertConformal(lat0, lon0, par1, par2);
        } else if (proj == 3) {
          att = new Attribute("ProjName", "POLARSTEREOGRAPHIC");
          double latt = geoSatelliteSecondHeader.centerLatitudeOfProjection;
          double lont = geoSatelliteSecondHeader.centerLongitudeOfProjection;
          double scale = (1. + Math.sin(DEG_TO_RAD * latt)) / 2.;
          dxKm = geoSatelliteSecondHeader.horizontalResolution;
          dyKm = geoSatelliteSecondHeader.verticalResolution;
          projection = new Stereographic(90.0, lont, scale);
        } else if (proj == 4) {
          att = new Attribute("ProjName", "LatLonProjection");
          projection = new LatLonProjection();
        }
        this.ncfile.addAttribute(null, att);


        // coordinate transform variable
        if (proj != 4) {


        }
        //double dxKm = 0.0, dyKm = 0.0, latin, lonProjectionOrigin ;


        // deal with projection




        this.ncfile.addAttribute(null, new Attribute("channel", geoSatelliteSecondHeader.channel));


        this.ncfile.addAttribute(null, new Attribute("geospatial_lat_min", new Float(geoSatelliteSecondHeader.latitudeOfSouth)));
        this.ncfile.addAttribute(null, new Attribute("geospatial_lat_max", new Float(geoSatelliteSecondHeader.latitudeOfNorth)));
        this.ncfile.addAttribute(null, new Attribute("geospatial_lon_min", new Float(geoSatelliteSecondHeader.longitudeOfWest)));
        this.ncfile.addAttribute(null, new Attribute("geospatial_lon_max", new Float(geoSatelliteSecondHeader.longitudeOfEast)));
        this.ncfile.addAttribute(null, new Attribute("geospatial_vertical_min", new Float(0.0)));
        this.ncfile.addAttribute(null, new Attribute("geospatial_vertical_max", new Float(0.0)));




        this.ncfile.addAttribute(null, new Attribute("sample_ratio", geoSatelliteSecondHeader.sampleRatio));




        att = new Attribute("horizontal_resolution", geoSatelliteSecondHeader.horizontalResolution);
        this.ncfile.addAttribute(null, att);
        att = new Attribute("vertical_resolution", geoSatelliteSecondHeader.verticalResolution);
        this.ncfile.addAttribute(null, att);




        // only one data variable per awx file


        //  set vname and units according to grid feature


        Variable var = new Variable(ncfile, ncfile.getRootGroup(), null, vname);


        var.addAttribute(new Attribute("long_name", vname));


        // get dimensions
        int velems;
        boolean isRecord = false;




        int nx = geoSatelliteSecondHeader.widthOfImage;
        int ny = geoSatelliteSecondHeader.heightOfImage;




        Dimension dimX;
        Dimension dimY;


        if (proj != 4) {
          dimX = new Dimension("x", nx, true, false, false);
          dimY = new Dimension("y", ny, true, false, false);
        } else {
          dimX = new Dimension("lon", nx, true, false, false);
          dimY = new Dimension("lat", ny, true, false, false);
        }


        ncfile.addDimension(null, dimY);
        ncfile.addDimension(null, dimX);


        int byteAmountofData = 1;
        velems = dimX.getLength() * dimY.getLength() * byteAmountofData;
        ArrayList dims = new ArrayList();
        dims.add(dimT);
        dims.add(dimY);
        dims.add(dimX);




        var.setDimensions(dims);


        // data type
        Class dataType = null;
        switch (byteAmountofData) {
          case 1:
            var.setDataType(DataType.BYTE);
            dataType = DataType.BYTE.getPrimitiveClassType();
            break;
          case 2:
            var.setDataType(DataType.SHORT);
            dataType = DataType.SHORT.getPrimitiveClassType();
            break;
          case 4:
            var.setDataType(DataType.INT);
            dataType = DataType.INT.getPrimitiveClassType();
            break;
          default:
            System.out.println("Unsupported Grid Procuct Dataset!");
            throw new UnsupportedDatasetException("Unsupported Grid Procuct Dataset");


        }


        var.addAttribute(new Attribute("coordinates", "Lon Lat"));


        var.addAttribute(new Attribute("_unsigned", "true"));
        var.addAttribute(new Attribute("units", "percent"));
        // if(var.getDataType() == DataType.BYTE) {
        //     var.addAttribute(new Attribute("_missing_value", new Byte((byte)-1)));
        //     var.addAttribute( new Attribute("scale_factor", new Byte((byte)(1))));
        //     var.addAttribute( new Attribute("add_offset", new Byte((byte)(0))));
        //  } else {
        var.addAttribute(new Attribute("_missing_value", new Short((short) -1)));
        var.addAttribute(new Attribute("scale_factor", new Short((short) (1))));
        var.addAttribute(new Attribute("add_offset", new Short((short) (0))));
        //  }


        // size and beginning data position in file
        int vsize = velems;
        long begin = this.firstHeader.recordsOfHeader * this.firstHeader.recoderLength;
        if (debug)
          log.warn(" name= " + vname + " vsize=" + vsize + " velems=" + velems + " begin= " + begin + " isRecord=" + isRecord + "\n");
        var.setSPobject(new Vinfo(vsize, begin, isRecord, nx, ny, dataType, this.firstHeader.byteOrder));
        String coordinates;
        if (proj != 4) {
          coordinates = "x y time";
        } else {
          coordinates = "Lon Lat time";
        }


        var.addAttribute(new Attribute(_Coordinate.Axes, coordinates));


        ncfile.addVariable(ncfile.getRootGroup(), var);




//          if (debug) System.out.println("start at proj coord "+start);


        LatLonPointImpl startPnt = new LatLonPointImpl(geoSatelliteSecondHeader.latitudeOfNorth, geoSatelliteSecondHeader.longitudeOfWest);
        LatLonPointImpl endPnt = new LatLonPointImpl(geoSatelliteSecondHeader.latitudeOfSouth, geoSatelliteSecondHeader.longitudeOfEast);
        if (debug) System.out.println("start at geo coord :" + startPnt);


        if (proj != 4) {
          // we have to project in order to find the origin
          ProjectionPointImpl start = (ProjectionPointImpl) projection.latLonToProj(
                  new LatLonPointImpl(geoSatelliteSecondHeader.latitudeOfSouth,
                          geoSatelliteSecondHeader.longitudeOfWest));
          double startx = start.getX();
          double starty = start.getY();


          Variable xaxis = new Variable(ncfile, null, null, "x");
          xaxis.setDataType(DataType.DOUBLE);
          xaxis.setDimensions("x");
          xaxis.addAttribute(new Attribute("long_name", "projection x coordinate"));
          xaxis.addAttribute(new Attribute("units", "km"));
          xaxis.addAttribute(new Attribute(_Coordinate.AxisType, "GeoX"));
          double[] data = new double[nx];
          if (proj == 2) {
            double lon_1 = geoSatelliteSecondHeader.longitudeOfEast;
            double lon_2 = geoSatelliteSecondHeader.longitudeOfWest;
            if (lon_1 < 0) lon_1 += 360.0;
            if (lon_2 < 0) lon_2 += 360.0;
            double dx = (lon_1 - lon_2) / (nx - 1);


            for (int i = 0; i < data.length; i++) {
              double ln = lon_2 + i * dx;
              ProjectionPointImpl pt = (ProjectionPointImpl) projection.latLonToProj(
                      new LatLonPointImpl(geoSatelliteSecondHeader.latitudeOfSouth, ln));
              data[i] = pt.getX();  // startx + i*dx;
            }
          } else {
            for (int i = 0; i < data.length; i++)
              data[i] = startx + i * dxKm;
          }


          dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{nx}, data);
          xaxis.setCachedData(dataA, false);
          ncfile.addVariable(null, xaxis);


          Variable yaxis = new Variable(ncfile, null, null, "y");
          yaxis.setDataType(DataType.DOUBLE);
          yaxis.setDimensions("y");
          yaxis.addAttribute(new Attribute("long_name", "projection y coordinate"));
          yaxis.addAttribute(new Attribute("units", "km"));
          yaxis.addAttribute(new Attribute(_Coordinate.AxisType, "GeoY"));
          data = new double[ny];
          double endy = starty + dyKm * (data.length - 1); // apparently lat1,lon1 is always the lower ledt, but data is upper left
          double lat2 = geoSatelliteSecondHeader.latitudeOfNorth;
          double lat1 = geoSatelliteSecondHeader.latitudeOfSouth;
          if (proj == 2) {
            double dy = (lat2 - lat1) / (ny - 1);
            for (int i = 0; i < data.length; i++) {
              double la = lat2 - i * dy;
              ProjectionPointImpl pt = (ProjectionPointImpl) projection.latLonToProj(
                      new LatLonPointImpl(la, geoSatelliteSecondHeader.longitudeOfWest));
              data[i] = pt.getY();  //endyy - i*dy;
            }
          } else {
            for (int i = 0; i < data.length; i++)
              data[i] = endy - i * dyKm;
          }
          dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{ny}, data);
          yaxis.setCachedData(dataA, false);
          ncfile.addVariable(null, yaxis);


          // coordinate transform variable
          Variable ct = new Variable(ncfile, null, null, projection.getClassName());
          ct.setDataType(DataType.CHAR);
          ct.setDimensions("");
          List params = projection.getProjectionParameters();
          for (int i = 0; i < params.size(); i++) {
            Parameter p = (Parameter) params.get(i);
            ct.addAttribute(new Attribute(p));
          }
          ct.addAttribute(new Attribute(_Coordinate.TransformType, "Projection"));
          ct.addAttribute(new Attribute(_Coordinate.Axes, "x, y"));
          // fake data
          dataA = Array.factory(DataType.CHAR.getPrimitiveClassType(), new int[]{});
          dataA.setChar(dataA.getIndex(), ' ');
          ct.setCachedData(dataA, false);


          ncfile.addVariable(null, ct);
          ncfile.addAttribute(null, new Attribute("Conventions", _Coordinate.Convention));
        } else {
          Variable yaxis = new Variable(ncfile, null, null, "lat");
          yaxis.setDataType(DataType.DOUBLE);
          yaxis.setDimensions("lat");
          yaxis.addAttribute(new Attribute("long_name", "latitude"));
          yaxis.addAttribute(new Attribute("units", "degree"));
          yaxis.addAttribute(new Attribute(_Coordinate.AxisType, "Lat"));
          double[] data = new double[ny];


          double dy = (endPnt.getLatitude() - startPnt.getLatitude()) / (ny - 1);
          for (int i = 0; i < data.length; i++) {
            data[i] = startPnt.getLatitude() + i * dy; // starty + i*dy;
          }


          dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{ny}, data);
          yaxis.setCachedData(dataA, false);
          ncfile.addVariable(null, yaxis);




          // create coordinate variables
          Variable xaxis = new Variable(ncfile, null, null, "lon");
          xaxis.setDataType(DataType.DOUBLE);
          xaxis.setDimensions("lon");
          xaxis.addAttribute(new Attribute("long_name", "longitude"));
          xaxis.addAttribute(new Attribute("units", "degree"));
          xaxis.addAttribute(new Attribute(_Coordinate.AxisType, "Lon"));
          data = new double[nx];


          double dx = (endPnt.getLongitude() - startPnt.getLongitude()) / (nx - 1);
          for (int i = 0; i < data.length; i++) {
            data[i] = startPnt.getLongitude() + i * dx; // startx + i*dx;


          }


          dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{nx}, data);
          xaxis.setCachedData(dataA, false);
          ncfile.addVariable(null, xaxis);
        }
        break;
      }
      case AwxFileFirstHeader.AWX_PRODUCT_TYPE_POLARSAT_IMAGE:
        throw new UnsupportedDatasetException();


      case AwxFileFirstHeader.AWX_PRODUCT_TYPE_GRID: {
        AwxFileGridProductSecondHeader gridprocuctSecondHeader = (AwxFileGridProductSecondHeader) this.secondHeader;




        att = new Attribute("satellite_name", gridprocuctSecondHeader.satelliteName);
        this.ncfile.addAttribute(null, att);


        att = new Attribute("grid_feature", gridprocuctSecondHeader.gridFeature);
        this.ncfile.addAttribute(null, att);


        att = new Attribute("byte_amount_of_data", gridprocuctSecondHeader.byteAmountofData);
        this.ncfile.addAttribute(null, att);


        att = new Attribute("data_scale", gridprocuctSecondHeader.dataScale);
        this.ncfile.addAttribute(null, att);


        //        this.ncfile.addAttribute(null, new Attribute("cdm_data_type", thredds.catalog.DataType.GRID.toString()));


        DateFormat dformat = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss");
        dformat.setTimeZone(java.util.TimeZone.getTimeZone("GMT"));
        Calendar cal = Calendar.getInstance();
        cal.set(gridprocuctSecondHeader.startYear,
                gridprocuctSecondHeader.startMonth - 1,
                gridprocuctSecondHeader.startDay,
                gridprocuctSecondHeader.startHour,
                gridprocuctSecondHeader.startMinute, 0);
        cal.setTimeZone(java.util.TimeZone.getTimeZone("GMT"));
        String dstring = dformat.format(cal.getTime());
        this.ncfile.addAttribute(null, new Attribute("time_coverage_start", dstring));
        int nz = 1;
        Dimension dimT = new Dimension("time", nz, true, false, false);
        ncfile.addDimension(null, dimT);


        // set time variable with time_coverage_start
        String timeCoordName = "time";
        Variable taxis = new Variable(ncfile, null, null, timeCoordName);
        taxis.setDataType(DataType.DOUBLE);
        taxis.setDimensions("time");
        taxis.addAttribute(new Attribute("long_name", "time since base date"));
        taxis.addAttribute(new Attribute(_Coordinate.AxisType, AxisType.Time.toString()));
        double[] tdata = new double[1];
        tdata[0] = cal.getTimeInMillis();
        Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[]{1}, tdata);
        taxis.setCachedData(dataA, false);
        DateFormatter formatter = new DateFormatter();
        taxis.addAttribute(new Attribute("units", "msecs since " + formatter.toDateTimeStringISO(new Date(0))));
        ncfile.addVariable(null, taxis);




        cal.set(gridprocuctSecondHeader.endYear,
                gridprocuctSecondHeader.endMonth - 1,

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  }


  public void augmentDataset(NetcdfDataset ds, CancelTask cancelTask) throws IOException {
    String start_date = ds.findAttValueIgnoreCase(null, "start_date", null);
    SimpleDateFormat df = new SimpleDateFormat("yyyy.DDD.HH.mm.ss");   // "2006.105.00.00.00"
    DateFormatter dfo = new DateFormatter();


    Date start = null;
    try {
      start = df.parse(start_date);
    } catch (ParseException e) {
      throw new RuntimeException("Cant read start_date="+start_date);
    }


    Variable v = ds.findVariable("time_offset");
    v.addAttribute(new Attribute( "units", "seconds since "+dfo.toDateTimeString(start)));


    Group root = ds.getRootGroup();
    root.addAttribute(new Attribute( "Convention", "Suomi-Station-CDM"));    
    ds.finish();
  }

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      Date d = format.parse(dateS+timeS);
      VariableDS time = new VariableDS(ds, vhrr, null, "time", DataType.LONG, "",
          "seconds since 1970-01-01 00:00", "time generated from PRODUCT_METADATA/PRODUCT_DETAILS");


      time.addAttribute( new Attribute(_Coordinate.AxisType, AxisType.Time.toString())); // // LOOK : cant handle scalar coordinates yet ??
      time.addAttribute( new Attribute("IsoDate", new DateFormatter().toDateTimeStringISO(d)));
      ds.addVariable(vhrr, time);
      ArrayLong.D0 timeData = new ArrayLong.D0();
      timeData.set(d.getTime() / 1000);
      time.setCachedData(timeData, true);

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      Array data = Array.factory(DataType.CHAR.getPrimitiveClassType(), new int[0], new char[] {' '});
      ct.setCachedData(data, true);
      ncfile.addVariable(null, ct);
    }


    DateFormatter formatter = new DateFormatter();


    ncfile.addAttribute(null, new Attribute("Conventions", _Coordinate.Convention));
    ncfile.addAttribute(null, new Attribute("format", volScan.getDataFormat()));
    //Date d = Cinrad2Record.getDate(volScan.getTitleJulianDays(), volScan.getTitleMsecs());
    //ncfile.addAttribute(null, new Attribute("base_date", formatter.toDateOnlyString(d)));


    ncfile.addAttribute(null, new Attribute("time_coverage_start", formatter.toDateTimeStringISO(volScan.getStartDate())));; //.toDateTimeStringISO(d)));
    ncfile.addAttribute(null, new Attribute("time_coverage_end", formatter.toDateTimeStringISO(volScan.getEndDate())));


    ncfile.addAttribute(null, new Attribute("history", "Direct read of Nexrad Level 2 file into NetCDF-Java 2.2 API"));
    ncfile.addAttribute(null, new Attribute("DataType", "Radial"));


    ncfile.addAttribute(null, new Attribute("Title", "Nexrad Level 2 Station "+volScan.getStationId()+" from "+
        formatter.toDateTimeStringISO(volScan.getStartDate()) + " to " +
        formatter.toDateTimeStringISO(volScan.getEndDate())));


    ncfile.addAttribute(null, new Attribute("Summary", "Weather Surveillance Radar-1988 Doppler (WSR-88D) "+
        "Level II data are the three meteorological base data quantities: reflectivity, mean radial velocity, and "+
        "spectrum width."));

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      ct.setCachedData(data, true);
      ncfile.addVariable(null, ct);
      */
    }


    DateFormatter formatter = new DateFormatter();


    ncfile.addAttribute(null, new Attribute("Conventions", _Coordinate.Convention));
    ncfile.addAttribute(null, new Attribute("format", volScan.getDataFormat()));
    ncfile.addAttribute(null, new Attribute("cdm_data_type", FeatureType.RADIAL.toString()));
    Date d = getDate(volScan.getTitleJulianDays(), volScan.getTitleMsecs());
    ncfile.addAttribute(null, new Attribute("base_date", formatter.toDateOnlyString(d)));


    ncfile.addAttribute(null, new Attribute("time_coverage_start", formatter.toDateTimeStringISO(d)));
    ncfile.addAttribute(null, new Attribute("time_coverage_end", formatter.toDateTimeStringISO(volScan.getEndDate())));


    ncfile.addAttribute(null, new Attribute("history", "Direct read of Nexrad Level 2 file into NetCDF-Java 2.2 API"));
    ncfile.addAttribute(null, new Attribute("DataType", "Radial"));


    ncfile.addAttribute(null, new Attribute("Title", "Nexrad Level 2 Station "+volScan.getStationId()+" from "+
        formatter.toDateTimeStringISO(volScan.getStartDate()) + " to " +
        formatter.toDateTimeStringISO(volScan.getEndDate())));


    ncfile.addAttribute(null, new Attribute("Summary", "Weather Surveillance Radar-1988 Doppler (WSR-88D) "+
        "Level II data are the three meteorological base data quantities: reflectivity, mean radial velocity, and "+
        "spectrum width."));

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        throw new FileNotFoundException("No run date of " + run);
    }


    @Override
    public String getName() {
      DateFormatter df = new DateFormatter();
      return "Run " + df.toDateTimeStringISO(FmrcInv.makeOffsetDate(base, runOffset[runIdx]));
    }

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