Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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            /*
            * Input
            */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
            input.add("echo_input", echo_input);

            /*
            * Output
            */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_output", echo_output);

            // parameter
            ct.setInput(input);
            ct.setOutput(output);
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            ct.setServiceName("MockPwscfMPIService");

            /* Input */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_mpi_output=hi");
            input.add("echo_mpi_input", echo_input);

            /* Output */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_mpi_output", echo_output);

            /* parameter */
            ct.setInput(input);
            ct.setOutput(output);
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            /*
            * Input
            */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter input_file = new ActualParameter();
//            URI InputFile =  URI.create("/gpfs1/u/ac/ccguser/alatop.inp");
            String InputFile =  "/gpfs1/u/ac/ccguser/alatop.inp";
            input_file.getType().changeType(URIParameterType.type);
            ((URIParameterType) input_file.getType()).setValue(InputFile);
            input.add("input_file", input_file);

            /*
            * Output
            */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter replicated_file = new ActualParameter();
            output.add("replicated_file", replicated_file);

            // parameter
            ct.setInput(input);
            ct.setOutput(output);
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                    String stderr = ftp.readRemoteFile(stderrURI, gssCred, localStdErrFile);
                    Map<String,ActualParameter> stringMap = null;
                    MessageContext<Object> output = invocationContext.getOutput();
                    for (Iterator<String> iterator = output.getNames(); iterator.hasNext(); ) {
                        String paramName = iterator.next();
                        ActualParameter actualParameter = (ActualParameter) output.getValue(paramName);
            if ("URIArray".equals(actualParameter.getType().getType().toString())) {
              URI outputURI = GfacUtils.createGsiftpURI(endpoint,app.getOutputDataDirectory());
              List<String> outputList = ftp.listDir(outputURI,gssCred);
              String[] valueList = outputList.toArray(new String[outputList.size()]);
              ((URIArrayType) actualParameter.getType()).setValueArray(valueList);
              stringMap = new HashMap<String, ActualParameter>();
              stringMap.put(paramName, actualParameter);
              invocationContext.getExecutionContext().getNotifier().output(invocationContext, actualParameter.toString());
            }
                        if ("StringArray".equals(actualParameter.getType().getType().toString())) {
                            String[] valueList = OutputUtils.parseStdoutArray(stdout, paramName);
                            ((StringArrayType) actualParameter.getType()).setValueArray(valueList);
                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                            invocationContext.getExecutionContext().getNotifier().output(invocationContext, actualParameter.toString());
                        }
                      else{
                      // This is to handle exception during the output parsing.
                        stringMap = OutputUtils.fillOutputFromStdout(invocationContext.<ActualParameter>getOutput(), stdout,stderr);
                        String paramValue = output.getStringValue(paramName);
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        try {
    MessageContext<Object> input = invocationContext.getInput();
        for (Iterator<String> iterator = input.getNames(); iterator.hasNext();) {
      String paramName = iterator.next();
      String paramValue = input.getStringValue(paramName);
      ActualParameter actualParameter = (ActualParameter) input
          .getValue(paramName);
      //TODO: Review this with type
      if ("URI".equals(actualParameter.getType().getType().toString())) {
                        ((URIParameterType) actualParameter.getType()).setValue(stageInputFiles(invocationContext, paramValue, actualParameter));
            }else if("URIArray".equals(actualParameter.getType().getType().toString())){
                List<String> split = Arrays.asList(paramValue.split(","));
                List<String> newFiles = new ArrayList<String>();
                    for (String paramValueEach : split) {
                        newFiles.add(stageInputFiles(invocationContext, paramValueEach, actualParameter));
                    }
                ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
            }
      inputNew.add(paramName, actualParameter);
    }
        }catch (Exception e){
//           invocationContext.getExecutionContext().getNotifier().executionFail(invocationContext,e,"Error during Input File staging");
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        MessageContext<ActualParameter> outputNew = new ParameterContextImpl();
        MessageContext<Object> input = invocationContext.getOutput();
        for (Iterator<String> iterator = input.getNames(); iterator.hasNext(); ) {
            String paramName = iterator.next();
            String paramValue = input.getStringValue(paramName);
            ActualParameter actualParameter = (ActualParameter) input
                    .getValue(paramName);
            //TODO: Review this with type
            GlobusHostType host = (GlobusHostType) invocationContext.getExecutionDescription().getHost().getType();
            GridFtp ftp = new GridFtp();
            gssContext = (GSISecurityContext) invocationContext.getSecurityContext(MYPROXY_SECURITY_CONTEXT);
            GSSCredential gssCred = null;
            try {
                gssCred = gssContext.getGssCredentails();
            } catch (SecurityException e) {
                e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
            }
            try {
                if ("URI".equals(actualParameter.getType().getType().toString())) {
                    for (String endpoint : host.getGridFTPEndPointArray()) {
                        ((URIParameterType) actualParameter.getType()).setValue(doStaging(outputFileStagingPath,
                                paramValue, actualParameter, ftp, gssCred, endpoint));
                    }
                } else if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    List<String> split = Arrays.asList(paramValue.split(","));
                    List<String> newFiles = new ArrayList<String>();
                    for (String endpoint : host.getGridFTPEndPointArray()) {
                        for (String paramValueEach : split) {
                            newFiles.add(doStaging(outputFileStagingPath, paramValueEach, actualParameter, ftp, gssCred, endpoint));
                        }
                        ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
                    }

                }
            } catch (URISyntaxException e) {
                throw new ProviderException(e.getMessage(), e, invocationContext);
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            jobAttr.setStdin(app.getStandardInput());
        } else {
            MessageContext<Object> input = context.getInput();
            for (Iterator<String> iterator = input.getNames(); iterator.hasNext(); ) {
                String paramName = iterator.next();
                ActualParameter actualParameter = (ActualParameter) input.getValue(paramName);
                if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    String[] values = ((URIArrayType) actualParameter.getType()).getValueArray();
                    for (String value : values) {
                        jobAttr.addArgument(value);
                    }
                } else {
                    String paramValue = input.getStringValue(paramName);
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        ParameterContextImpl outputParam = new ParameterContextImpl();


        // List<Parameter> outputs = serviceDescription.getOutputParameters();
        for (OutputParameterType parameter : serviceDescriptionType.getOutputParametersArray()) {
            ActualParameter actualParameter = new ActualParameter();
            if ("String".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StringParameterType.type);
            } else if ("Double".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(DoubleParameterType.type);
            } else if ("Integer".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(IntegerParameterType.type);
            } else if ("Float".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FloatParameterType.type);
            } else if ("Boolean".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(BooleanParameterType.type);
            } else if ("File".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FileParameterType.type);
            } else if ("URI".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(URIParameterType.type);
            } else if ("StringArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StringArrayType.type);
            } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(DoubleArrayType.type);
            } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(IntegerArrayType.type);
            } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FloatArrayType.type);
            } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(BooleanArrayType.type);
            } else if ("FileArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FileArrayType.type);
            } else if ("URIArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(URIArrayType.type);
            } else if ("StdOut".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdOutParameterType.type);
            } else if ("StdErr".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdErrParameterType.type);
            }
            outputParam.add(parameter.getParameterName(), actualParameter);
        }

        invocationContext.setInput(inputParam);
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            // if parameter value is not already set, we let it go
            if (outMessage.getValue(parameterName) == null) {
                continue;
            }

            ActualParameter actual = outMessage.getValue(parameterName);

            if ("StdOut".equals(actual.getType().getType().toString())){
              ((StdOutParameterType)actual.getType()).setValue(stdout);
              result.put(parameterName, actual);
            }else if ("StdErr".equals(actual.getType().getType().toString())){
        ((StdErrParameterType)actual.getType()).setValue(stderr);
        result.put(parameterName, actual);
      }
            else{
              String parseStdout = parseStdout(stdout, parameterName);
              if(parseStdout != null){
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        return new URI(buf.toString());
    }

    public static ActualParameter getInputActualParameter(Parameter parameter, OMElement element) {
        OMElement innerelement = null;
        ActualParameter actualParameter = new ActualParameter();
        if ("String".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringParameterType.type);
            if (!"".equals(element.getText())) {
                ((StringParameterType) actualParameter.getType()).setValue(element.getText());
            } else if(element.getChildrenWithLocalName("value").hasNext()){
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((StringParameterType) actualParameter.getType()).setValue(innerelement.getText());
            } else{
               ((StringParameterType) actualParameter.getType()).setValue("");
            }
        } else if ("Double".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleParameterType.type);
            if (!"".equals(element.getText())) {
                ((DoubleParameterType) actualParameter.getType()).setValue(new Double(innerelement.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((DoubleParameterType) actualParameter.getType()).setValue(new Double(innerelement.getText()));
            }
        } else if ("Integer".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerParameterType.type);
            if (!"".equals(element.getText())) {
                ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(innerelement.getText()));
            }
        } else if ("Float".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatParameterType.type);
            if (!"".equals(element.getText())) {
                ((FloatParameterType) actualParameter.getType()).setValue(new Float(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((FloatParameterType) actualParameter.getType()).setValue(new Float(innerelement.getText()));
            }
        } else if ("Boolean".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanParameterType.type);
            if (!"".equals(element.getText())) {
                ((BooleanParameterType) actualParameter.getType()).setValue(new Boolean(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((BooleanParameterType) actualParameter.getType()).setValue(Boolean.parseBoolean(innerelement.getText()));
            }
        } else if ("File".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileParameterType.type);
            if (!"".equals(element.getText())) {
                ((FileParameterType) actualParameter.getType()).setValue(element.getText());
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((FileParameterType) actualParameter.getType()).setValue(innerelement.getText());
            }
        } else if ("URI".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIParameterType.type);
            if (!"".equals(element.getText())) {
                ((URIParameterType) actualParameter.getType()).setValue(element.getText());
            } else if(element.getChildrenWithLocalName("value").hasNext()){
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                System.out.println(actualParameter.getType().toString());
                log.debug(actualParameter.getType().toString());
                ((URIParameterType) actualParameter.getType()).setValue(innerelement.getText());
            } else{
                ((URIParameterType) actualParameter.getType()).setValue("");
            }
        } else if ("StringArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((StringArrayType) actualParameter.getType()).insertValue(i++, arrayValue);
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((StringArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(arrayValue));
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(innerelement.getText()));
                }
            }

        } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
               String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(arrayValue));
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(innerelement.getText()));
                }
            }
        } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(arrayValue));
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(innerelement.getText()));
                }
            }
        } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(arrayValue));
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(innerelement.getText()));
                }
            }
        } else if ("FileArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((FileArrayType) actualParameter.getType()).insertValue(i++, arrayValue);
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((FileArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        } else if ("URIArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for(String arrayValue:list){
                    ((URIArrayType) actualParameter.getType()).insertValue(i++,arrayValue);
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((URIArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        }
        return actualParameter;
    }
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