Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        } else {
            MessageContext input = context.getInMessageContext();;
            Map<String,Object> inputs = input.getParameters();
            Set<String> keys = inputs.keySet();
            for (String paramName : keys ) {
               ActualParameter actualParameter = (ActualParameter) inputs.get(paramName);
                if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    String[] values = ((URIArrayType) actualParameter.getType()).getValueArray();
                    for (String value : values) {
                        jobAttr.addArgument(value);
                    }
                } else {
                    String paramValue = MappingFactory.toString(actualParameter);
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        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(appDesc);
        applicationContext.setHostDescription(host);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType)echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);

        // added extra
        ActualParameter copy_input = new ActualParameter();
        copy_input.getType().changeType(URIParameterType.type);
        ((URIParameterType)copy_input.getType()).setValue("file:///tmp/tmpstrace");

        ActualParameter outlocation = new ActualParameter();
        ((StringParameterType)outlocation.getType()).setValue("./outputData/.");
        inMessage.addParameter("copy_input", copy_input);
        inMessage.addParameter("outputlocation", outlocation);

        // added extra



        jobExecutionContext.setInMessageContext(inMessage);

        MessageContext outMessage = new MessageContext();
        ActualParameter echo_out = new ActualParameter();
//    ((StringParameterType)echo_input.getType()).setValue("echo_output=hello");
        outMessage.addParameter("echo_output", echo_out);

        jobExecutionContext.setOutMessageContext(outMessage);
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            /*
            * Input
            */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
            input.add("echo_input", echo_input);

            /*
            * Output
            */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_output", echo_output);

            // parameter
            ct.setInput(input);
            ct.setOutput(output);
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            ct.setServiceName("SimpleMPIEcho");

            /* Input */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_mpi_output=hi");
            input.add("echo_mpi_input", echo_input);

            /* Output */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_mpi_output", echo_output);

            /* parameter */
            ct.setInput(input);
            ct.setOutput(output);
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        ParameterContextImpl outputParam = new ParameterContextImpl();


        // List<Parameter> outputs = serviceDescription.getOutputParameters();
        for (OutputParameterType parameter : serviceDescriptionType.getOutputParametersArray()) {
            ActualParameter actualParameter = new ActualParameter();
            if ("String".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StringParameterType.type);
            } else if ("Double".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(DoubleParameterType.type);
            } else if ("Integer".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(IntegerParameterType.type);
            } else if ("Float".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FloatParameterType.type);
            } else if ("Boolean".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(BooleanParameterType.type);
            } else if ("File".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FileParameterType.type);
            } else if ("URI".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(URIParameterType.type);
            } else if ("StringArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StringArrayType.type);
            } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(DoubleArrayType.type);
            } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(IntegerArrayType.type);
            } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FloatArrayType.type);
            } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(BooleanArrayType.type);
            } else if ("FileArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(FileArrayType.type);
            } else if ("URIArray".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(URIArrayType.type);
            } else if ("StdOut".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdOutParameterType.type);
            } else if ("StdErr".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdErrParameterType.type);
            }
            outputParam.add(parameter.getParameterName(), actualParameter);
        }

        invocationContext.setInput(inputParam);
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            ct.setServiceName("MockPwscfMPIService");

            /* Input */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_mpi_output=hi");
            input.add("echo_mpi_input", echo_input);

            /* Output */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_mpi_output", echo_output);

            /* parameter */
            ct.setInput(input);
            ct.setOutput(output);
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            /*
            * Input
            */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter input_file = new ActualParameter();
//            URI InputFile =  URI.create("/gpfs1/u/ac/ccguser/alatop.inp");
            String InputFile =  "/gpfs1/u/ac/ccguser/alatop.inp";
            input_file.getType().changeType(URIParameterType.type);
            ((URIParameterType) input_file.getType()).setValue(InputFile);
            input.add("input_file", input_file);

            /*
            * Output
            */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter replicated_file = new ActualParameter();
            output.add("replicated_file", replicated_file);

            // parameter
            ct.setInput(input);
            ct.setOutput(output);
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            jobAttr.setStdin(app.getStandardInput());
        } else {
            MessageContext<Object> input = context.getInput();
            for (Iterator<String> iterator = input.getNames(); iterator.hasNext(); ) {
                String paramName = iterator.next();
                ActualParameter actualParameter = (ActualParameter) input.getValue(paramName);
                if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    String[] values = ((URIArrayType) actualParameter.getType()).getValueArray();
                    for (String value : values) {
                        jobAttr.addArgument(value);
                    }
                } else {
                    String paramValue = input.getStringValue(paramName);
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                    String stderr = ftp.readRemoteFile(stderrURI, gssCred, localStdErrFile);
                    Map<String,ActualParameter> stringMap = null;
                    MessageContext<Object> output = invocationContext.getOutput();
                    for (Iterator<String> iterator = output.getNames(); iterator.hasNext(); ) {
                        String paramName = iterator.next();
                        ActualParameter actualParameter = (ActualParameter) output.getValue(paramName);
            if ("URIArray".equals(actualParameter.getType().getType().toString())) {
              URI outputURI = GfacUtils.createGsiftpURI(endpoint,app.getOutputDataDirectory());
              List<String> outputList = ftp.listDir(outputURI,gssCred);
              String[] valueList = outputList.toArray(new String[outputList.size()]);
              ((URIArrayType) actualParameter.getType()).setValueArray(valueList);
              stringMap = new HashMap<String, ActualParameter>();
              stringMap.put(paramName, actualParameter);
              invocationContext.getExecutionContext().getNotifier().output(invocationContext, actualParameter.toString());
            }
                        if ("StringArray".equals(actualParameter.getType().getType().toString())) {
                            String[] valueList = OutputUtils.parseStdoutArray(stdout, paramName);
                            ((StringArrayType) actualParameter.getType()).setValueArray(valueList);
                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                            invocationContext.getExecutionContext().getNotifier().output(invocationContext, actualParameter.toString());
                        }
                      else{
                      // This is to handle exception during the output parsing.
                        stringMap = OutputUtils.fillOutputFromStdout(invocationContext.<ActualParameter>getOutput(), stdout,stderr);
                        String paramValue = output.getStringValue(paramName);
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        try {
    MessageContext<Object> input = invocationContext.getInput();
        for (Iterator<String> iterator = input.getNames(); iterator.hasNext();) {
      String paramName = iterator.next();
      String paramValue = input.getStringValue(paramName);
      ActualParameter actualParameter = (ActualParameter) input
          .getValue(paramName);
      //TODO: Review this with type
      if ("URI".equals(actualParameter.getType().getType().toString())) {
                        ((URIParameterType) actualParameter.getType()).setValue(stageInputFiles(invocationContext, paramValue, actualParameter));
            }else if("URIArray".equals(actualParameter.getType().getType().toString())){
                List<String> split = Arrays.asList(paramValue.split(","));
                List<String> newFiles = new ArrayList<String>();
                    for (String paramValueEach : split) {
                        newFiles.add(stageInputFiles(invocationContext, paramValueEach, actualParameter));
                    }
                ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
            }
      inputNew.add(paramName, actualParameter);
    }
        }catch (Exception e){
//           invocationContext.getExecutionContext().getNotifier().executionFail(invocationContext,e,"Error during Input File staging");
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