Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        } else {
            MessageContext input = context.getInMessageContext();;
            Map<String,Object> inputs = input.getParameters();
            Set<String> keys = inputs.keySet();
            for (String paramName : keys ) {
                ActualParameter actualParameter = (ActualParameter) inputs.get(paramName);
                if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    String[] values = ((URIArrayType) actualParameter.getType()).getValueArray();
                    for (String value : values) {
                        jobAttr.addArgument(value);
                    }
                } else {
                    String paramValue = MappingFactory.toString(actualParameter);
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                    Map<String, Object> output = jobExecutionContext.getOutMessageContext().getParameters();
                    Set<String> keys = output.keySet();
                    for (String paramName : keys) {
                        ActualParameter actualParameter = (ActualParameter) output.get(paramName);
                        if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                            URI outputURI = GFacUtils.createGsiftpURI(endpoint, app.getOutputDataDirectory());
                            List<String> outputList = ftp.listDir(outputURI, gssCred);
                            String[] valueList = outputList.toArray(new String[outputList.size()]);
                            ((URIArrayType) actualParameter.getType()).setValueArray(valueList);
                            // why to instantiate new instance?
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        }else if ("StringArray".equals(actualParameter.getType().getType().toString())) {
                            String[] valueList = OutputUtils.parseStdoutArray(stdout, paramName);
                            ((StringArrayType) actualParameter.getType()).setValueArray(valueList);
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        } else if ("URI".equals(actualParameter.getType().getType().toString())) {
                            stringMap.put(paramName, actualParameter);
                        }
                        else if ("String".equals(actualParameter.getType().getType().toString())) {
                          String path = app.getOutputDataDirectory()+"/"+((StringParameterType) actualParameter.getType()).getValue();
                            URI outputURI = GFacUtils.createGsiftpURI(endpoint, path);
                            ((StringParameterType) actualParameter.getType()).setValue(outputURI.toString());
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        }
                        else {
                            // This is to handle exception during the output parsing.
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        MessageContext outputNew = new MessageContext();
        MessageContext output = jobExecutionContext.getOutMessageContext();
        Map<String, Object> parameters = output.getParameters();
        for (String paramName : parameters.keySet()) {
            ActualParameter actualParameter = (ActualParameter) parameters
                    .get(paramName);

            GridFtp ftp = new GridFtp();
            GSSCredential gssCred = ((GSISecurityContext)jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT)).getGssCredentails();
            try {
                if ("URI".equals(actualParameter.getType().getType().toString())) {
                    for (String endpoint : gridFTPEndpointArray) {
                        ((URIParameterType) actualParameter.getType()).setValue(doStaging(outputFileStagingPath,
                                MappingFactory.toString(actualParameter), ftp, gssCred, endpoint));
                    }
                } else if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    List<String> split = Arrays.asList(MappingFactory.toString(actualParameter).split(","));
                    List<String> newFiles = new ArrayList<String>();
                    for (String endpoint : gridFTPEndpointArray) {
                        for (String paramValueEach : split) {
                            newFiles.add(doStaging(outputFileStagingPath, paramValueEach, ftp, gssCred, endpoint));
                        }
                        ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
                    }

                }
            } catch (URISyntaxException e) {
                log.error(e.getMessage());
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  }

  protected MessageContext getInMessageContext() {
    MessageContext inMessage = new MessageContext();
   
        ActualParameter i1 = new ActualParameter();
        i1.getType().changeType(URIParameterType.type);
        ((URIParameterType)i1.getType()).setValue("file:///tmp/ifile1");
        inMessage.addParameter("i1", i1);
       
        ActualParameter i2 = new ActualParameter();
        i2.getType().changeType(URIParameterType.type);
        ((URIParameterType)i2.getType()).setValue("file:///tmp/ifile2");
        inMessage.addParameter("i2", i2);
       
        ActualParameter i3 = new ActualParameter();
        i2.getType().changeType(URIParameterType.type);
        ((URIParameterType)i2.getType()).setValue("///tmp/ifile2");
        inMessage.addParameter("i3", i2);

        ActualParameter simpleArg = new ActualParameter();
        simpleArg.getType().changeType(StringParameterType.type);
        ((StringParameterType)simpleArg.getType()).setValue("argument1");
        inMessage.addParameter("a1", simpleArg);
       
        ActualParameter nameValueArg = new ActualParameter();
        nameValueArg.getType().changeType(StringParameterType.type);
        ((StringParameterType)nameValueArg.getType()).setValue("name1=value1");
        inMessage.addParameter("nameValueArg", nameValueArg);
       
    ActualParameter echo_input = new ActualParameter();
    ((StringParameterType) echo_input.getType())
        .setValue("echo_output=hello");
    inMessage.addParameter("echo_input", echo_input);
       
    return inMessage;
  }
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  protected MessageContext getOutMessageContext() {
    MessageContext om1 = new MessageContext();
   
    // TODO: Aint the output parameters are only the name of the files staged out to the gridftp endpoint?
    ActualParameter o1 = new ActualParameter();
    ((StringParameterType) o1.getType())
    .setValue("tempfile");
    om1.addParameter("o1", o1);

    ActualParameter o2 = new ActualParameter();
    o2.getType().changeType(URIParameterType.type);
   
    ((URIParameterType)o2.getType()).setValue("http://path/to/upload");
    om1.addParameter("o2", o2);

   
   
    return om1;
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        OutputParameterType[] outputParametersArray = context.getApplicationContext().
                getServiceDescription().getType().getOutputParametersArray();
        MessageContext outMessageContext = context.getOutMessageContext();
        for (OutputParameterType outparamType : outputParametersArray) {
            String parameterName = outparamType.getParameterName();
            ActualParameter actual = (ActualParameter)outMessageContext.getParameter(outparamType.getParameterName());
            // if parameter value is not already set, we let it go
            if (actual == null) {
                continue;
            }
            if ("StdOut".equals(actual.getType().getType().toString())) {
                ((StdOutParameterType) actual.getType()).setValue(stdout);
                result.put(parameterName, actual);
            } else if ("StdErr".equals(actual.getType().getType().toString())) {
                ((StdErrParameterType) actual.getType()).setValue(stderr);
                result.put(parameterName, actual);
            } else {
                String parseStdout = parseStdout(stdout, parameterName);
                if (parseStdout != null) {
                    MappingFactory.fromString(actual, parseStdout);
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            for(OutputParameterType outparamType : outputParametersArray){
                /* Assuming that there is just a single result. If you want to add more results, update the necessary
                   logic below */
                String paramName = outparamType.getParameterName();
                ActualParameter outParam = new ActualParameter();
                outParam.getType().changeType(StringParameterType.type);
                ((StringParameterType) outParam.getType()).setValue(executionResult);
                jobExecutionContext.getOutMessageContext().addParameter(paramName, outParam);
            }

        } catch (InvalidSshKeyException e) {
            throw new GFacProviderException("Invalid SSH key", e);
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    MessageContext input = context.getInMessageContext();
    ;
    Map<String, Object> inputs = input.getParameters();
    Set<String> keys = inputs.keySet();
    for (String paramName : keys) {
      ActualParameter actualParameter = (ActualParameter) inputs.get(paramName);
      if ("URIArray".equals(actualParameter.getType().getType().toString())) {
        String[] values = ((URIArrayType) actualParameter.getType()).getValueArray();
        for (String value : values) {
          cmd.append(value);
          cmd.append(SPACE);
        }
      } else {
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            OutputParameterType[] outputParametersArray = jobExecutionContext.getApplicationContext().
                    getServiceDescription().getType().getOutputParametersArray();
            for(OutputParameterType outparamType : outputParametersArray){
                String paramName = outparamType.getParameterName();
                if(paramName.equals("test-hadoop")){
                    ActualParameter outParam = new ActualParameter();
                    outParam.getType().changeType(StringParameterType.type);
                    ((StringParameterType) outParam.getType()).setValue(job.getTrackingURL());
                    jobExecutionContext.getOutMessageContext().addParameter("test-hadoop", outParam);
                }
            }
        } catch (Exception e) {
            String errMessage = "Error occurred during Map-Reduce job execution.";
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            ct.setServiceName("SimpleMPIEcho");

            /* Input */
            ParameterContextImpl input = new ParameterContextImpl();
            ActualParameter echo_input = new ActualParameter();
            ((StringParameterType) echo_input.getType()).setValue("echo_mpi_output=hi");
            input.add("echo_mpi_input", echo_input);

            /* Output */
            ParameterContextImpl output = new ParameterContextImpl();
            ActualParameter echo_output = new ActualParameter();
            output.add("echo_mpi_output", echo_output);

            /* parameter */
            ct.setInput(input);
            ct.setOutput(output);
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Related Classes of org.apache.airavata.commons.gfac.type.ActualParameter

  • org.apache.airavata.core.gfac.GfacAPI
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  • org.apache.airavata.core.gfac.provider.utils.GramRSLGenerator
  • org.apache.airavata.core.gfac.services.impl.BESProviderTest
  • org.apache.airavata.core.gfac.services.impl.BigRed2Test
  • org.apache.airavata.core.gfac.services.impl.BigRed2TestWithSSHAuth
  • org.apache.airavata.core.gfac.services.impl.GramProviderTest
  • org.apache.airavata.core.gfac.services.impl.GramProviderTestWithMyProxyAuth
  • org.apache.airavata.core.gfac.services.impl.GSISSHProviderTest
  • org.apache.airavata.core.gfac.services.impl.GSISSHProviderTestWithMyProxyAuth
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