Package ucar.nc2

Examples of ucar.nc2.NetcdfFile

172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
     float b_name(3);
   } ArrayOfStructures(10);
    type = Layout(8);  type= 1 (contiguous) storageSize = (10,16) dataSize=0 dataAddress=2048
   */
   public void testStructureWithArrayMember() throws IOException {
    NetcdfFile ncfile = TestH5.openH5("support/DSwith_array_member.h5");

    Variable v = ncfile.findVariable("ArrayOfStructures");
    v.setCaching(false);
    assert( null != v);
    assert( v.getDataType() == DataType.STRUCTURE);
    assert( v instanceof Structure);
    assert( v.getRank() == 1);
    assert( v.getShape()[0] == 10);

    try {
      Array data = v.read(new int[] {4}, new int[] {3});
      assert(data.getElementType() == StructureData.class);
      assert (data instanceof ArrayStructure);
      assert (data.getSize() == 3) : data.getSize();
      assert (data.getRank() == 1);

      int count = 0;
      IndexIterator iter = data.getIndexIterator();
      while (iter.hasNext()) {
        Object o = iter.next();
        assert (o instanceof StructureData);
        StructureData d = (StructureData) o;

        Array arr = d.getArray("a_name");
        assert (arr != null);
        assert (arr.getElementType() == int.class);
        assert (arr instanceof ArrayInt);
        assert (arr.getInt( arr.getIndex()) == 4 + count);
        NCdump.printArray( arr, "a_name", out, null);

        arr = d.getArray("b_name");
        assert (arr != null);
        assert (arr.getElementType() == float.class);
        assert (arr instanceof ArrayFloat);
        assert (arr.getSize() == 3);
        assert (arr.getFloat( arr.getIndex()) == (float) 4.0 + count);
        NCdump.printArray( arr, "b_name", out, null);

        count++;
      }

    }
    catch (InvalidRangeException e) { assert false; }
    catch (IOException e) { assert false; }

    try {
      Array data = v.read();
      assert(data.getElementType() == StructureData.class);
      assert (data instanceof ArrayStructure);
      assert (data.getSize() == 10);
      assert (data.getRank() == 1);

      int count = 0;
      IndexIterator iter = data.getIndexIterator();
      while (iter.hasNext()) {
        Object o = iter.next();
        assert (o instanceof StructureData);
        StructureData d = (StructureData) o;

        Array arr = d.getArray("a_name");
        assert (arr != null);
        assert (arr.getElementType() == int.class);
        assert (arr instanceof ArrayInt);
        assert (arr.getInt( arr.getIndex()) == count);
        NCdump.printArray( arr, "a_name", out, null);

        arr = d.getArray("b_name");
        assert (arr != null);
        assert (arr.getElementType() == float.class);
        assert (arr instanceof ArrayFloat);
        assert (arr.getSize() == 3);
        assert (arr.getFloat( arr.getIndex()) == (float) count);
        NCdump.printArray( arr, "b_name", out, null);

        count++;
      }

    } catch (IOException e) { assert false; }

    ncfile.close();
  } // */
 
View Full Code Here
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
    compare(filename, remote);
  }

  void compare(String file, String remote) throws IOException {
    System.out.printf("---------------------------\n");
    NetcdfFile ncfile = NetcdfDataset.openFile(file, null);
    NetcdfFile ncfileRemote = new CdmRemote(remote);

    Formatter f= new Formatter();
    CompareNetcdf2 cn = new CompareNetcdf2(f, false, false, false);
    boolean ok = cn.compare(ncfile, ncfileRemote);
    if (ok)
      System.out.printf("compare %s ok %n", file);
    else
      System.out.printf("compare %s NOT OK %n%s", file, f.toString());
    ncfile.close();
    ncfileRemote.close();
  }
View Full Code Here
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
  //////////////////////////////////////////////////////////////
  public static void main2(String[] args) {
    try {
      String filename = "C:/data/formats/netcdf3/testWrite.nc";
      NetcdfFile ncfile = NetcdfFile.open(filename);
      NcStreamWriter writer = new NcStreamWriter(ncfile, null);

      File file = new File("C:/temp/out.ncs");
      FileOutputStream fos = new FileOutputStream(file);
      WritableByteChannel wbc = fos.getChannel();
      writer.streamAll( wbc);
      wbc.close();

      NetcdfFile ncfileBack = NetcdfFile.open(file.getPath());

      Formatter f = new Formatter();
      CompareNetcdf2 cn = new CompareNetcdf2(f, false, false, true);
      boolean ok = cn.compare(ncfile, ncfileBack);
      if (ok)
        System.out.printf("compare %s ok %n", file);
      else
        System.out.printf("compare %s NOT OK %n%s", file, f.toString());

      ncfileBack.close();
      ncfile.close();


    } catch (Exception e) {
      e.printStackTrace();
View Full Code Here
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
      String remote = "http://localhost:8080/thredds/cdmremote/testCdmremote/netcdf3/testWrite.nc";
      CdmRemote ncfileRemote = new CdmRemote(remote);

      String fileOut = "C:/temp/out2.ncs";
      ncfileRemote.writeToFile(fileOut);
      NetcdfFile ncfileBack = NetcdfFile.open(fileOut);

      String filename = "C:/data/formats/netcdf3/testWrite.nc";
      NetcdfFile ncfileOrg = NetcdfFile.open(filename);

      Formatter f = new Formatter();
      CompareNetcdf2 cn = new CompareNetcdf2(f, false, false, true);
      boolean ok = cn.compare(ncfileOrg, ncfileBack);
      if (ok)
        System.out.printf("compare %s ok %n", fileOut);
      else
        System.out.printf("compare %s NOT OK %n%s", fileOut, f.toString());

      ncfileBack.close();
      ncfileOrg.close();
      ncfileRemote.close();

    } catch (Exception e) {
      e.printStackTrace();
    }
View Full Code Here
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
  public void testNamExtract() throws IOException, InvalidRangeException {
    String location = TestAll.cdmUnitTestDir + "ncml/nc/namExtract/test_agg.ncml";
    System.out.println(" TestOffAggExistingTimeUnitsChange.open "+ location);

    NetcdfFile ncfile = NetcdfDataset.openFile(location, null);

    Variable v = ncfile.findVariable("time");
    assert v != null;
    assert v.getDataType() == DataType.DOUBLE;

    String units = v.getUnitsString();
    assert units != null;
    assert units.equals("hours since 2006-09-25T06:00:00Z");

    int count = 0;
    Array data = v.read();
    NCdumpW.printArray(data, "time", new PrintWriter(System.out), null);
    while (data.hasNext()) {
      assert TestAll.closeEnough(data.nextInt(), (count + 1) * 3);
      count++;
    }

    ncfile.close();
  }
View Full Code Here
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
                    " </aggregation>\n" +
                    "</netcdf>";

    String location = "file:"+ TestAll.cdmUnitTestDir + "ncml/nc/narr/";
    System.out.println(" TestOffAggExistingTimeUnitsChange.testNarrGrib=\n"+ ncml);
    NetcdfFile ncfile = NcMLReader.readNcML(new StringReader(ncml), location, null);

    Variable v = ncfile.findVariable("time");
    assert v != null;
    assert v.getDataType() == DataType.DOUBLE;

    String units = v.getUnitsString();
    assert units != null;
    assert units.equals("hours since 2007-04-11T00:00:00Z") : units;

    int count = 0;
    Array data = v.read();
    NCdumpW.printArray(data, "time", new PrintWriter(System.out), null);
    while (data.hasNext()) {
      assert data.nextInt() == count * 3;
      count++;
    }

    ncfile.close();
  }
View Full Code Here
87
88
89
90
91
92
93
94
95
96
            infile=args[0];
        } else { System.out.println("Usage: java SigmetIOServiceProvider inputFile");
        System.exit(0);  }
        try {
            NetcdfFile.registerIOProvider(SigmetIOServiceProvider.class);
            NetcdfFile ncfile=NetcdfFile.open(infile);
            System.out.println("ncfile = \n"+ncfile);
        } catch (Exception e) { System.out.println("MAIN!!!   "+e.toString());
        e.printStackTrace(); }
    }
View Full Code Here
72
73
74
75
76
77
78
79
80
81
82
  public void testOneCDL() throws IOException, InterruptedException {
    testCDL("C:\\data\\netcdf4\\files\\tst_ncml.nc", true);
  }

  private void testCDL(String filename, boolean show) throws IOException, InterruptedException {
    NetcdfFile ncfile = TestNC2.open(filename);
    System.out.println("File "+filename);

    ByteArrayOutputStream bout = new ByteArrayOutputStream(30 * 1000);
    NCdump.print(ncfile, bout, false, false, false, true, null, null);
    String njCDL = bout.toString();
View Full Code Here
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
  }

  public void testReadCompressedInt() throws IOException {
    // actually doesnt seem to be compressed ??

    NetcdfFile ncfile = TestH5.openH5("support/zip.h5");
    Variable dset = ncfile.findVariable("Data/Compressed_Data");
    assert dset != null;
    assert(dset.getDataType() == DataType.INT);

    assert(dset.getRank() == 2);
    assert(dset.getShape()[0] == 1000);
    assert(dset.getShape()[1] == 20);

    // read entire array
    Array A = dset.read();
    assert(A.getRank() == 2);
    assert(A.getShape()[0] == 1000);
    assert(A.getShape()[1] == 20);

    int[] shape = A.getShape();
    Index ima = A.getIndex();
    for (int i = 0; i < shape[0]; i++)
      for (int j = 0; j < shape[1]; j++)
        assert(  A.getInt(ima.set(i,j)) == i+j) : i+" "+j+" "+A.getInt(ima);

    ncfile.close();
  }
View Full Code Here
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
  }

  public void testReadCompressedByte() throws IOException {
    // actually doesnt seem to be compressed ??

    NetcdfFile ncfile = TestH5.openH5("msg/MSG1_8bit_HRV.H5");
    Variable dset = ncfile.findVariable("image1/image_preview");
    assert dset != null;
    assert(dset.getDataType() == DataType.BYTE);

    assert(dset.getRank() == 2);
    assert(dset.getShape()[0] == 64);
    assert(dset.getShape()[1] == 96);

    // read entire array
    Array A = dset.read();
    assert(A.getRank() == 2);
    assert(A.getShape()[0] == 64);
    assert(A.getShape()[1] == 96);

    byte[] firstRow = new byte[] {
       0, 0, 0, 0, 0, 0, 0, 0, 0, 4, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31,
      31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31,
      31, 31, 31, 31, 31, 31, 31, 31, 31, 32, 32, 33, 34, 35, 36, 37, 39, 39,
      40, 42, 42, 44, 44, 57, 59, 52, 52, 53, 55, 59, 62, 63, 66, 71, 79, 81,
      83, 85, 87, 89, 90, 87, 84, 84, 87, 94, 82, 80, 76, 77, 68, 59, 57, 61,
      68, 81, 42};

    byte[] lastRow = new byte[] {
      0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 17, 31, 31,
      31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31,
      31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31, 31,
      31, 31, 30, 31, 28, 20, 11, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
      0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0};

    int[] shape = A.getShape();
    Index ima = A.getIndex();
    int lrow = shape[0]-1;
    for (int j = 0; j < shape[1]; j++) {
      assert(  A.getByte(ima.set(0,j)) == firstRow[j]) : A.getByte(ima)+" should be "+firstRow[j];
      assert(  A.getByte(ima.set(lrow,j)) == lastRow[j]) : A.getByte(ima)+" should be "+lastRow[j];
    }

    ncfile.close();
  }
View Full Code Here
TOP

Related Classes of ucar.nc2.NetcdfFile

  • cnslab.cnsnetwork.PlotResult
  • cnslab.gui.ContentProcessResult
  • cnslab.gui.ContentProcessResult2
  • edu.wisc.ssec.mcidas.adde.AddePointDataReader
  • examples.Pres_temp_4D_wr
  • examples.Sfc_pres_temp_wr
  • examples.Simple_xy_wr
  • opendap.dap.http.HTTPMethod
  • opendap.dap.http.HTTPSession
  • org.apache.commons.httpclient.Header
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.