Examples of OWLAnnotation

org.semanticweb.owl.model.OWLAnnotation
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2006

Annotations are used in the various types of annotation axioms, which bind annotations to their subjects (i.e. axioms or declarations). An annotation is equal to another annotation if both objects have equal annotation URIs and have equal annotation values
org.semanticweb.owlapi.model.OWLAnnotation
Annotations are used in the various types of annotation axioms, which bind annotations to their subjects (i.e. axioms or declarations).
An annotation is equal to another annotation if both objects have equal annotation URIs and have equal annotation values. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

Examples of org.semanticweb.owlapi.model.OWLAnnotation

    @Nonnull
    @Override
    protected Set<? extends OWLAxiom> createAxioms() {
        OWLAnnotationProperty ap = AnnotationProperty(IRI("http://annotation.com/annos#prop"));
        OWLLiteral val = Literal("Test", "");
        OWLAnnotation anno = Annotation(ap, val);
        Set<OWLAnnotation> annos = new HashSet<>();
        annos.add(anno);
        OWLClassExpression ce = Class(iri("A"));
        OWLObjectProperty p1 = ObjectProperty(iri("p1"));
        OWLObjectProperty p2 = ObjectProperty(iri("p2"));

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

            String comment) {
        // Just register the namespace with the consumer and add it as an
        // annotation to the ontology
        getConsumer().setDefaultNamespaceTagValue(value);
        // Add an annotation to the ontology
        OWLAnnotation annotation = getAnnotationForTagValuePair(
                OBOVocabulary.DEFAULT_NAMESPACE.getName(), value);
        applyChange(new AddOntologyAnnotation(getOntology(), annotation));
    }

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    @Nonnull
    private OWLAnnotationAssertionAxiom convertToAnnotation(
            @Nonnull OWLNamedIndividual ind,
            @Nonnull OWLDataPropertyAssertionAxiom ax) {
        OWLDataFactory df = getDataFactory();
        OWLAnnotation anno = df.getOWLAnnotation(
                df.getOWLAnnotationProperty(ax.getProperty()
                        .asOWLDataProperty().getIRI()), ax.getObject());
        return df.getOWLAnnotationAssertionAxiom(ind.getIRI(), anno);
    }

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

        if (xrefs != null) {
            StringTokenizer tokenizer = new StringTokenizer(xrefs, ",");
            while (tokenizer.hasMoreTokens()) {
                String xrefValue = tokenizer.nextToken();
                assert xrefValue != null;
                OWLAnnotation xrefAnnotation = getConsumer().parseXRef(
                        xrefValue);
                annotations.add(xrefAnnotation);
            }
        }
        return annotations;

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    public LegacyEntityAnnotationElementHandler(OWLXMLParserHandler handler) {
        super(handler);
    }


    protected OWLAxiom createAxiom() throws OWLXMLParserException {
        OWLAnnotation anno = annotation;
        annotation = null;
        entity = null;
        return getOWLDataFactory().getOWLAnnotationAssertionAxiom(anno.getProperty(), entity.getIRI(), anno.getValue());
    }

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

          OWLAxiom removeax = factory.getOWLAnnotationAssertionAxiom(
              (OWLAnnotationSubject) annind, ann);
          manager.applyChange(new RemoveAxiom(ontology, removeax));
        }
        String[] array = (String[]) urisandvals.get(keys[i]);
        OWLAnnotation newann = factory.getOWLAnnotation(factory
            .getOWLAnnotationProperty(OWLRDFVocabulary.RDFS_LABEL
                .getIRI()), factory.getOWLStringLiteral(
            array[0], "en"));
        OWLAxiom ax = factory.getOWLAnnotationAssertionAxiom(
            annind.getIRI(), newann);

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

      OWLAnnotationSubject annsub = annind.getIRI();
      OWLAxiom removeax = factory.getOWLAnnotationAssertionAxiom(annsub,
          ann);
      manager.applyChange(new RemoveAxiom(ontology, removeax));
    }
    OWLAnnotation newann = factory.getOWLAnnotation(
        factory.getOWLAnnotationProperty(OWLRDFVocabulary.RDFS_LABEL
            .getIRI()), factory.getOWLStringLiteral(value, "en"));
    OWLAxiom ax = factory.getOWLAnnotationAssertionAxiom(annind.getIRI(),
        newann);
    manager.applyChange(new AddAxiom(ontology, ax));

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    for (OWLAnnotation ann : anns) {
      OWLAnnotationSubject annsub = ent.getIRI();
      OWLAxiom removeax = factory.getOWLAnnotationAssertionAxiom(annsub, ann);
      manager.applyChange(new RemoveAxiom(ontology, removeax));
    }
    OWLAnnotation newann = factory.getOWLAnnotation(
        factory.getOWLAnnotationProperty(OWLRDFVocabulary.RDFS_LABEL.getIRI()), factory.getOWLStringLiteral(value, "en"));
    OWLAxiom ax = factory.getOWLAnnotationAssertionAxiom(ent.getIRI(), newann);
    manager.applyChange(new AddAxiom(ontology, ax));
//    SBMLreactionCollector.logfilewriter.println("RDF label for " + ent.toString() + ": "
//        + value);

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Examples of org.semanticweb.owlapi.model.OWLAnnotation


        OWLClass cls = factory.getOWLClass(IRI.create(CLAZZ));
        OWLDataProperty dp = factory.getOWLDataProperty(IRI.create(DP));
        OWLObjectProperty op = factory.getOWLObjectProperty(IRI.create(OP));
        OWLAnnotationProperty oa = factory.getOWLAnnotationProperty(IRI.create(label));
        OWLAnnotation oav = factory.getOWLAnnotation(oa, factory.getOWLStringLiteral(clazzlabel, "en"));
        OWLDatatype dt = factory.getOWLDatatype(IRI.create(DATATYPE));
        OWLNamedIndividual sub = factory.getOWLNamedIndividual(IRI.create(SUBJECT));
        OWLNamedIndividual obj = factory.getOWLNamedIndividual(IRI.create(OBJECT));
        OWLLiteral literal1 = factory.getOWLTypedLiteral(VALUE, dt);
        OWLDeclarationAxiom daxiomcls = factory.getOWLDeclarationAxiom(cls); // Classe

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Examples of org.semanticweb.owlapi.model.OWLAnnotation


        OWLClass cls = factory.getOWLClass(IRI.create(CLAZZ));
        OWLDataProperty dp = factory.getOWLDataProperty(IRI.create(DP));
        OWLObjectProperty op = factory.getOWLObjectProperty(IRI.create(OP));
        OWLAnnotationProperty oa = factory.getOWLAnnotationProperty(IRI.create(label));
        OWLAnnotation oav = factory.getOWLAnnotation(oa, factory.getOWLStringLiteral(clazzlabel, "en"));
        OWLDatatype dt = factory.getOWLDatatype(IRI.create(DATATYPE));
        OWLNamedIndividual sub = factory.getOWLNamedIndividual(IRI.create(SUBJECT));
        OWLNamedIndividual obj = factory.getOWLNamedIndividual(IRI.create(OBJECT));
        OWLLiteral literal1 = factory.getOWLTypedLiteral(VALUE, dt);
        OWLDeclarationAxiom daxiomcls = factory.getOWLDeclarationAxiom(cls); // Classe

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