Examples of OWLAnnotation

org.semanticweb.owl.model.OWLAnnotation
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2006

Annotations are used in the various types of annotation axioms, which bind annotations to their subjects (i.e. axioms or declarations). An annotation is equal to another annotation if both objects have equal annotation URIs and have equal annotation values
org.semanticweb.owlapi.model.OWLAnnotation
Annotations are used in the various types of annotation axioms, which bind annotations to their subjects (i.e. axioms or declarations).
An annotation is equal to another annotation if both objects have equal annotation URIs and have equal annotation values. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

Examples of org.semanticweb.owlapi.model.OWLAnnotation


    final public OWLAnnotation Annotation() throws ParseException {
        OWLAnnotationProperty prop;
        OWLAnnotationValue val;
        Set<OWLAnnotation> annos = null;
        OWLAnnotation anno = null;
        jj_consume_token(ANNOTATION);
        annos = new HashSet<OWLAnnotation>();
        jj_consume_token(OPENPAR);
        label_14: while (true) {
            switch (jj_ntk == -1 ? jj_ntk_f() : jj_ntk) {

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

        throw new Error("Missing return statement in function");
    }


    final public Set<OWLAnnotation> AxiomAnnotationSet() throws ParseException {
        Set<OWLAnnotation> annos = null;
        OWLAnnotation anno;
        label_15: while (true) {
            switch (jj_ntk == -1 ? jj_ntk_f() : jj_ntk) {
                case ANNOTATION: {
                    ;
                    break;

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    private final Set<SWRLAtom> head = new HashSet<>(Arrays.asList(v2));


    @Test
    public void shouldBuildAnnotation() {
        // given
        OWLAnnotation expected = df.getOWLAnnotation(ap, lit);
        BuilderAnnotation builder = new BuilderAnnotation(expected, df);
        // when
        OWLObject built = builder.buildObject();
        // then
        assertEquals(expected, built);

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

                + ":FMDomain rdf:type owl:NamedIndividual , prov:Activity ; prov:ass :DM .";
        OWLOntology ontology = loadOntologyFromString(input);
        OWLOntology o = roundTrip(ontology, new TurtleDocumentFormat());
        Set<OWLSubClassOfAxiom> axioms = o.getAxioms(AxiomType.SUBCLASS_OF);
        assertEquals(1, axioms.size());
        OWLAnnotation next = axioms.iterator().next().getAnnotations()
                .iterator().next();
        assertTrue(next.getValue() instanceof OWLAnonymousIndividual);
        OWLAnonymousIndividual ind = (OWLAnonymousIndividual) next.getValue();
        Set<OWLAxiom> anns = new HashSet<>();
        for (OWLAxiom ax : o.getAxioms()) {
            if (ax.getAnonymousIndividuals().contains(ind)) {
                anns.add(ax);
            }

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    @Test
    public void testPlainLiteralSerializationComments2() throws Exception {
        OWLOntology o = m.createOntology();
        OWLLiteral l = m.getOWLDataFactory().getOWLLiteral("test",
                OWL2Datatype.RDF_PLAIN_LITERAL);
        OWLAnnotation a = m.getOWLDataFactory().getOWLAnnotation(
                m.getOWLDataFactory().getRDFSComment(), l);
        m.applyChange(new AddOntologyAnnotation(o, a));
        ByteArrayOutputStream out = new ByteArrayOutputStream();
        m.saveOntology(o, out);
        String expected = "<rdfs:comment>test</rdfs:comment>";

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Examples of org.semanticweb.owlapi.model.OWLAnnotation


    @Nonnull
    @Override
    protected Set<? extends OWLAxiom> createAxioms() {
        Set<OWLAxiom> axioms = new HashSet<>();
        OWLAnnotation annoOuterOuter1 = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterOuterLabel1")),
                Literal("Outer Outer label 1"));
        OWLAnnotation annoOuterOuter2 = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterOuterLabel2")),
                Literal("Outer Outer label 2"));
        Set<OWLAnnotation> outerOuterAnnos = new HashSet<>();
        outerOuterAnnos.add(annoOuterOuter1);
        outerOuterAnnos.add(annoOuterOuter2);
        OWLAnnotation annoOuter = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterLabel")),
                Literal("Outer label"), outerOuterAnnos);
        OWLAnnotation annoInner = df.getOWLAnnotation(
                AnnotationProperty(iri("myLabel")), Literal("Label"),
                singleton(annoOuter));
        OWLAxiom ax = df.getOWLSubClassOfAxiom(Class(iri("A")),
                Class(iri("B")), singleton(annoInner));
        axioms.add(ax);

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

        body.add(df.getSWRLDataPropertyAtom(p, x, y));
        body.add(df.getSWRLDataRangeAtom(
                df.getOWLDatatype(XSDVocabulary.STRING.getIRI()), y));
        Set<SWRLAtom> head = new TreeSet<>();
        head.add(df.getSWRLClassAtom(a, x));
        OWLAnnotation ann = df.getOWLAnnotation(df.getRDFSLabel(),
                df.getOWLLiteral("test", ""));
        SWRLRule rule = df.getSWRLRule(body, head, singleton(ann));
        ontology.getOWLOntologyManager().addAxiom(ontology, rule);
        OWLDatatypeDefinitionAxiom def = df.getOWLDatatypeDefinitionAxiom(
                df.getOWLDatatype(IRI.create("urn:mydatatype")),

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

    @Override
    protected OWLOntology createOntology() {
        OWLOntology ont = getOWLOntology("AnnotationOntology");
        OWLAnnotationProperty prop = AnnotationProperty(IRI("http://www.semanticweb.org/ontologies/test/annotationont#prop"));
        OWLLiteral value = Literal(33);
        OWLAnnotation annotation = Annotation(prop, value);
        ont.getOWLOntologyManager().applyChange(
                new AddOntologyAnnotation(ont, annotation));
        ont.getOWLOntologyManager().addAxiom(ont, Declaration(prop));
        return ont;
    }

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

                value = df.getOWLAnonymousIndividual(object.toString());
            } else {
                value = object;
            }
            OWLAnnotationProperty prop = df.getOWLAnnotationProperty(predicate);
            OWLAnnotation anno = df.getOWLAnnotation(prop, value);
            OWLAnnotationSubject annoSubject;
            if (isAnonymous(subject)) {
                annoSubject = df.getOWLAnonymousIndividual(subject.toString());
            } else {
                annoSubject = subject;

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Examples of org.semanticweb.owlapi.model.OWLAnnotation

        }
    }


    private Set<OWLAnnotation> getSynonymTypeAnnotations(Matcher matcher) {
        if (matcher.group(SYNONYM_TYPE_GROUP) != null) {
            OWLAnnotation typeAnnotation = getSynonymTypeAnnotation(matcher);
            return Collections.singleton(typeAnnotation);
        } else {
            return Collections.emptySet();
        }
    }

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