Examples of org.semanticweb.owlapi.model.OWLAnnotation

org.semanticweb.owlapi.model.OWLAnnotation
Annotations are used in the various types of annotation axioms, which bind annotations to their subjects (i.e. axioms or declarations).
An annotation is equal to another annotation if both objects have equal annotation URIs and have equal annotation values. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

    private final Set<SWRLAtom> head = new HashSet<>(Arrays.asList(v2));


    @Test
    public void shouldBuildAnnotation() {
        // given
        OWLAnnotation expected = df.getOWLAnnotation(ap, lit);
        BuilderAnnotation builder = new BuilderAnnotation(expected, df);
        // when
        OWLObject built = builder.buildObject();
        // then
        assertEquals(expected, built);

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                + ":FMDomain rdf:type owl:NamedIndividual , prov:Activity ; prov:ass :DM .";
        OWLOntology ontology = loadOntologyFromString(input);
        OWLOntology o = roundTrip(ontology, new TurtleDocumentFormat());
        Set<OWLSubClassOfAxiom> axioms = o.getAxioms(AxiomType.SUBCLASS_OF);
        assertEquals(1, axioms.size());
        OWLAnnotation next = axioms.iterator().next().getAnnotations()
                .iterator().next();
        assertTrue(next.getValue() instanceof OWLAnonymousIndividual);
        OWLAnonymousIndividual ind = (OWLAnonymousIndividual) next.getValue();
        Set<OWLAxiom> anns = new HashSet<>();
        for (OWLAxiom ax : o.getAxioms()) {
            if (ax.getAnonymousIndividuals().contains(ind)) {
                anns.add(ax);
            }

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    @Test
    public void testPlainLiteralSerializationComments2() throws Exception {
        OWLOntology o = m.createOntology();
        OWLLiteral l = m.getOWLDataFactory().getOWLLiteral("test",
                OWL2Datatype.RDF_PLAIN_LITERAL);
        OWLAnnotation a = m.getOWLDataFactory().getOWLAnnotation(
                m.getOWLDataFactory().getRDFSComment(), l);
        m.applyChange(new AddOntologyAnnotation(o, a));
        ByteArrayOutputStream out = new ByteArrayOutputStream();
        m.saveOntology(o, out);
        String expected = "<rdfs:comment>test</rdfs:comment>";

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    @Nonnull
    @Override
    protected Set<? extends OWLAxiom> createAxioms() {
        Set<OWLAxiom> axioms = new HashSet<>();
        OWLAnnotation annoOuterOuter1 = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterOuterLabel1")),
                Literal("Outer Outer label 1"));
        OWLAnnotation annoOuterOuter2 = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterOuterLabel2")),
                Literal("Outer Outer label 2"));
        Set<OWLAnnotation> outerOuterAnnos = new HashSet<>();
        outerOuterAnnos.add(annoOuterOuter1);
        outerOuterAnnos.add(annoOuterOuter2);
        OWLAnnotation annoOuter = df.getOWLAnnotation(
                AnnotationProperty(iri("myOuterLabel")),
                Literal("Outer label"), outerOuterAnnos);
        OWLAnnotation annoInner = df.getOWLAnnotation(
                AnnotationProperty(iri("myLabel")), Literal("Label"),
                singleton(annoOuter));
        OWLAxiom ax = df.getOWLSubClassOfAxiom(Class(iri("A")),
                Class(iri("B")), singleton(annoInner));
        axioms.add(ax);

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        body.add(df.getSWRLDataPropertyAtom(p, x, y));
        body.add(df.getSWRLDataRangeAtom(
                df.getOWLDatatype(XSDVocabulary.STRING.getIRI()), y));
        Set<SWRLAtom> head = new TreeSet<>();
        head.add(df.getSWRLClassAtom(a, x));
        OWLAnnotation ann = df.getOWLAnnotation(df.getRDFSLabel(),
                df.getOWLLiteral("test", ""));
        SWRLRule rule = df.getSWRLRule(body, head, singleton(ann));
        ontology.getOWLOntologyManager().addAxiom(ontology, rule);
        OWLDatatypeDefinitionAxiom def = df.getOWLDatatypeDefinitionAxiom(
                df.getOWLDatatype(IRI.create("urn:mydatatype")),

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    @Override
    protected OWLOntology createOntology() {
        OWLOntology ont = getOWLOntology("AnnotationOntology");
        OWLAnnotationProperty prop = AnnotationProperty(IRI("http://www.semanticweb.org/ontologies/test/annotationont#prop"));
        OWLLiteral value = Literal(33);
        OWLAnnotation annotation = Annotation(prop, value);
        ont.getOWLOntologyManager().applyChange(
                new AddOntologyAnnotation(ont, annotation));
        ont.getOWLOntologyManager().addAxiom(ont, Declaration(prop));
        return ont;
    }

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                value = df.getOWLAnonymousIndividual(object.toString());
            } else {
                value = object;
            }
            OWLAnnotationProperty prop = df.getOWLAnnotationProperty(predicate);
            OWLAnnotation anno = df.getOWLAnnotation(prop, value);
            OWLAnnotationSubject annoSubject;
            if (isAnonymous(subject)) {
                annoSubject = df.getOWLAnonymousIndividual(subject.toString());
            } else {
                annoSubject = subject;

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        }
    }


    private Set<OWLAnnotation> getSynonymTypeAnnotations(Matcher matcher) {
        if (matcher.group(SYNONYM_TYPE_GROUP) != null) {
            OWLAnnotation typeAnnotation = getSynonymTypeAnnotation(matcher);
            return Collections.singleton(typeAnnotation);
        } else {
            return Collections.emptySet();
        }
    }

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        if (xrefs != null) {
            StringTokenizer tokenizer = new StringTokenizer(xrefs, ",");
            while (tokenizer.hasMoreTokens()) {
                String xref = tokenizer.nextToken();
                assert xref != null;
                OWLAnnotation xrefAnnotation = getConsumer().parseXRef(xref);
                annotations.add(xrefAnnotation);
            }
        }
        return annotations;
    }

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            OWLLiteral nameLiteral = df.getOWLLiteral(name);
            applyChange(new AddAxiom(getOntology(),
                    df.getOWLAnnotationAssertionAxiom(df.getRDFSLabel(),
                            annotationPropertyIRI, nameLiteral)));
        } else {
            OWLAnnotation annotation = getAnnotationForTagValuePair(
                    OBOVocabulary.SYNONYM_TYPE_DEF.getName(), value);
            applyChange(new AddOntologyAnnotation(getOntology(), annotation));
        }
        // ID QuotedString [Scope]
        // 18th April 2012

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