Package org.gephi.io.importer.api

Examples of org.gephi.io.importer.api.Issue

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            } catch (IndexOutOfBoundsException e) {
            }

            //Check error
            if (columnName.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat2"), Issue.Level.SEVERE));
                columnName = "default" + i;
            }
            if (typeString.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat6", columnName), Issue.Level.INFO));
                typeString = "varchar";
            }

            //Clean parenthesis
            typeString = typeString.replaceAll("\\([0-9]*\\)", "");

            if (typeString.equals("varchar")) {
                type = String.class;
            } else if (typeString.equals("bool")) {
                type = Boolean.class;
            } else if (typeString.equals("boolean")) {
                type = Boolean.class;
            } else if (typeString.equals("integer")) {
                type = Integer.class;
            } else if (typeString.equals("tinyint")) {
                type = Integer.class;
            } else if (typeString.equals("int")) {
                type = Integer.class;
            } else if (typeString.equals("double")) {
                type = Double.class;
            } else if (typeString.equals("float")) {
                type = Float.class;
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat5", typeString), Issue.Level.WARNING));
            }

            if (columnName.equals("x")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.X);
                report.log("Node property found: x");
            } else if (columnName.equals("y")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.Y);
                report.log("Node property found: y");
            } else if (columnName.equals("visible")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.VISIBLE);
                report.log("Node property found: visible");
            } else if (columnName.equals("color")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.COLOR);
                report.log("Node property found: color");
            } else if (columnName.equals("fixed")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.FIXED);
                report.log("Node property found: fixed");
            } else if (columnName.equals("style")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.STYLE);
                report.log("Node property found: style");
            } else if (columnName.equals("width")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.WIDTH);
                report.log("Node property found: width");
            } else if (columnName.equals("height")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.HEIGHT);
                report.log("Node property found: height");
            } else if (columnName.equals("label")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.LABEL);
                report.log("Node property found: label");
            } else if (columnName.equals("labelvisible")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.LABELVISIBLE);
                report.log("Node property found: labelvisible");
            } else {
                ColumnDraft column = container.getNodeColumn(columnName);
                if (column == null) {
                    column = container.addNodeColumn(columnName, type);
                    nodeColumns[i - 1] = new GDFColumn(column);
                    report.log("Node attribute " + columnName + " (" + type.getSimpleName() + ")");
                } else {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat8", columnName), Issue.Level.SEVERE));
                }
            }
        }
    }
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            } catch (IndexOutOfBoundsException e) {
            }

            //Check error
            if (columnName.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat2"), Issue.Level.SEVERE));
                columnName = "default" + i;
            }
            if (typeString.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat6", columnName), Issue.Level.INFO));
                typeString = "varchar";
            }

            //Clean parenthesis
            typeString = typeString.replaceAll("\\([0-9]*\\)", "");

            if (typeString.equals("varchar")) {
                type = String.class;
            } else if (typeString.equals("bool")) {
                type = Boolean.class;
            } else if (typeString.equals("boolean")) {
                type = Boolean.class;
            } else if (typeString.equals("integer")) {
                type = Integer.class;
            } else if (typeString.equals("tinyint")) {
                type = Integer.class;
            } else if (typeString.equals("int")) {
                type = Integer.class;
            } else if (typeString.equals("double")) {
                type = Double.class;
            } else if (typeString.equals("float")) {
                type = Float.class;
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat5", typeString), Issue.Level.WARNING));
            }

            if (columnName.equals("color")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.COLOR);
                report.log("Edge property found: color");
            } else if (columnName.equals("visible")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.VISIBLE);
                report.log("Edge property found: visible");
            } else if (columnName.equals("weight")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.WEIGHT);
                report.log("Edge property found: weight");
            } else if (columnName.equals("directed")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.DIRECTED);
                report.log("Edge property found: directed");
            } else if (columnName.equals("label")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.LABEL);
                report.log("Edge property found: label");
            } else if (columnName.equals("labelvisible")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.LABELVISIBLE);
                report.log("Edge property found: labelvisible");
            } else {
                ColumnDraft column = container.getEdgeColumn(columnName);
                if (column == null) {
                    column = container.addEdgeColumn(columnName, type);
                    edgeColumns[i - 2] = new GDFColumn(column);
                    report.log("Edge attribute " + columnName + " (" + type.getSimpleName() + ")");
                } else {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat9", columnName), Issue.Level.SEVERE));
                }
            }
        }
    }
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                        node.setLabelVisible(Boolean.parseBoolean(data));
                        break;
                }
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat3", column.getNodeColumn(), node, data);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        } else if (column.getAttributeColumn() != null) {
            try {
                node.parseAndSetValue(column.getAttributeColumn().getId(), data);
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat4", column.getAttributeColumn().getTypeClass().getSimpleName(), column.getAttributeColumn().getTitle(), node);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        }
    }
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                        edge.setLabelVisible(Boolean.parseBoolean(data));
                        break;
                }
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat3", column.getEdgeColumn(), data);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        } else if (column.getAttributeColumn() != null) {
            try {
                edge.parseAndSetValue(column.getAttributeColumn().getId(), data);
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat4", column.getAttributeColumn().getTypeClass().getSimpleName(), column.getAttributeColumn().getTitle(), edge);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        }
    }
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            if (defaultEdgeType.equalsIgnoreCase("undirected")) {
                container.setEdgeDefault(EdgeDirectionDefault.UNDIRECTED);
            } else if (defaultEdgeType.equalsIgnoreCase("directed")) {
                container.setEdgeDefault(EdgeDirectionDefault.DIRECTED);
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_defaultedgetype", defaultEdgeType), Issue.Level.SEVERE));
            }
        }
    }
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                id = reader.getAttributeValue(i);
            }
        }

        if (id.isEmpty()) {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_nodeid"), Issue.Level.SEVERE));
            return;
        }

        NodeDraft node = null;
        if (container.nodeExists(id)) {
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                fore = reader.getAttributeValue(i);
            }
        }

        if (fore.isEmpty()) {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datakey", node), Issue.Level.SEVERE));
            return;
        }

        boolean end = false;
        while (reader.hasNext() && !end) {
            int xmltype = reader.next();

            switch (xmltype) {
                case XMLStreamReader.CHARACTERS:
                    if (!xmlReader.isWhiteSpace()) {
                        value += xmlReader.getText();
                    }
                    break;
                case XMLStreamReader.END_ELEMENT:
                    if (ATTVALUE.equalsIgnoreCase(xmlReader.getLocalName())) {
                        end = true;
                    }
                    break;
            }
        }

        if (!value.isEmpty()) {
            //Property
            NodeProperties prop = nodePropertiesAttributes.get(fore);
            if (prop != null) {
                try {
                    switch (prop) {
                        case X:
                            node.setX(parseFloat(value));
                            break;
                        case Y:
                            node.setY(parseFloat(value));
                            break;
                        case Z:
                            node.setZ(parseFloat(value));
                            break;
                        case SIZE:
                            node.setSize(parseFloat(value));
                            break;
                        case LABEL:
                            node.setLabel(value);
                            break;
                        case R:
                            if (node.getColor() == null) {
                                node.setColor(Integer.parseInt(value), 0, 0);
                            } else {
                                node.setColor(Integer.parseInt(value), node.getColor().getGreen(), node.getColor().getBlue());
                            }
                            break;
                        case G:
                            if (node.getColor() == null) {
                                node.setColor(0, Integer.parseInt(value), 0);
                            } else {
                                node.setColor(node.getColor().getRed(), Integer.parseInt(value), node.getColor().getBlue());
                            }
                            break;
                        case B:
                            if (node.getColor() == null) {
                                node.setColor(0, 0, Integer.parseInt(value));
                            } else {
                                node.setColor(node.getColor().getRed(), node.getColor().getGreen(), Integer.parseInt(value));
                            }
                            break;
                    }
                } catch (Exception e) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datavalue", fore, node, prop.toString()), Issue.Level.SEVERE));
                }
                return;
            }

            //Data attribute value
            ColumnDraft column = container.getNodeColumn(fore);
            if (column != null) {
                try {
                    node.parseAndSetValue(column.getId(), value);
                } catch (Exception e) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datavalue", fore, node, column.getTitle()), Issue.Level.SEVERE));
                }
            }
        }
    }
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            if (directed.equalsIgnoreCase("true")) {
                edge.setType(EdgeDirection.DIRECTED);
            } else if (directed.equalsIgnoreCase("false")) {
                edge.setType(EdgeDirection.UNDIRECTED);
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_edgetype", directed, edge), Issue.Level.SEVERE));
            }
        }


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                fore = reader.getAttributeValue(i);
            }
        }

        if (fore.isEmpty()) {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datakey", edge), Issue.Level.SEVERE));
            return;
        }

        boolean end = false;
        while (reader.hasNext() && !end) {
            int xmltype = reader.next();

            switch (xmltype) {
                case XMLStreamReader.CHARACTERS:
                    if (!xmlReader.isWhiteSpace()) {
                        value += xmlReader.getText();
                    }
                    break;
                case XMLStreamReader.END_ELEMENT:
                    if (ATTVALUE.equalsIgnoreCase(xmlReader.getLocalName())) {
                        end = true;
                    }
                    break;
            }
        }

        if (!value.isEmpty()) {
            EdgeProperties prop = edgePropertiesAttributes.get(fore);
            if (prop != null) {
                try {
                    switch (prop) {
                        case WEIGHT:
                            edge.setWeight(parseFloat(value));
                            break;
                        case LABEL:
                            edge.setLabel(value);
                            break;
                        case R:
                            if (edge.getColor() == null) {
                                edge.setColor(Integer.parseInt(value), 0, 0);
                            } else {
                                edge.setColor(Integer.parseInt(value), edge.getColor().getGreen(), edge.getColor().getBlue());
                            }
                            break;
                        case G:
                            if (edge.getColor() == null) {
                                edge.setColor(0, Integer.parseInt(value), 0);
                            } else {
                                edge.setColor(edge.getColor().getRed(), Integer.parseInt(value), edge.getColor().getBlue());
                            }
                            break;
                        case B:
                            if (edge.getColor() == null) {
                                edge.setColor(0, 0, Integer.parseInt(value));
                            } else {
                                edge.setColor(edge.getColor().getRed(), edge.getColor().getGreen(), Integer.parseInt(value));
                            }
                            break;
                    }
                } catch (Exception e) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datavalue", fore, edge, prop.toString()), Issue.Level.SEVERE));
                }
                return;
            }

            //Data attribute value
            ColumnDraft column = container.getEdgeColumn(fore);
            if (column != null) {
                try {
                    edge.parseAndSetValue(column.getId(), value);
                } catch (Exception e) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_datavalue", fore, edge, column.getTitle()), Issue.Level.SEVERE));
                }
            }
        }
    }
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            }
            if (property) {
                return;
            }
        } else {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributeempty", title), Issue.Level.SEVERE));
            return;
        }

        if (!property && type.isEmpty()) {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributetype1", title), Issue.Level.SEVERE));
            type = "string";
        }

        if (!property) {
            //Class type
            if (forStr.isEmpty() || !(forStr.equalsIgnoreCase("node") || forStr.equalsIgnoreCase("edge") || forStr.equalsIgnoreCase("all"))) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributeclass", title), Issue.Level.SEVERE));
                return;
            }

            //Default?
            boolean end = false;
            boolean defaultFlag = false;
            while (reader.hasNext() && !end) {
                int xmltype = reader.next();

                switch (xmltype) {
                    case XMLStreamReader.START_ELEMENT:
                        if (ATTRIBUTE_DEFAULT.equalsIgnoreCase(xmlReader.getLocalName())) {
                            defaultFlag = true;
                        }
                        break;
                    case XMLStreamReader.CHARACTERS:
                        if (defaultFlag && !xmlReader.isWhiteSpace()) {
                            defaultStr = xmlReader.getText();
                        }
                        break;
                    case XMLStreamReader.END_ELEMENT:
                        if (ATTRIBUTE.equalsIgnoreCase(xmlReader.getLocalName())) {
                            end = true;
                        }
                        break;
                }
            }

            //Type
            Class attributeType = String.class;
            if (type.equalsIgnoreCase("boolean") || type.equalsIgnoreCase("bool")) {
                attributeType = boolean.class;
            } else if (type.equalsIgnoreCase("integer") || type.equalsIgnoreCase("int")) {
                attributeType = int.class;
            } else if (type.equalsIgnoreCase("long")) {
                attributeType = Long.class;
            } else if (type.equalsIgnoreCase("float")) {
                attributeType = Float.class;
            } else if (type.equalsIgnoreCase("double")) {
                attributeType = Double.class;
            } else if (type.equalsIgnoreCase("string")) {
                attributeType = String.class;
            } else if (type.equalsIgnoreCase("bigdecimal")) {
                attributeType = BigDecimal.class;
            } else if (type.equalsIgnoreCase("biginteger")) {
                attributeType = BigInteger.class;
            } else if (type.equalsIgnoreCase("byte")) {
                attributeType = Byte.class;
            } else if (type.equalsIgnoreCase("char")) {
                attributeType = Character.class;
            } else if (type.equalsIgnoreCase("short")) {
                attributeType = Short.class;
            } else if (type.equalsIgnoreCase("listboolean")) {
                attributeType = boolean[].class;
            } else if (type.equalsIgnoreCase("listint")) {
                attributeType = int[].class;
            } else if (type.equalsIgnoreCase("listlong")) {
                attributeType = long[].class;
            } else if (type.equalsIgnoreCase("listfloat")) {
                attributeType = float[].class;
            } else if (type.equalsIgnoreCase("listdouble")) {
                attributeType = double[].class;
            } else if (type.equalsIgnoreCase("liststring")) {
                attributeType = String[].class;
            } else if (type.equalsIgnoreCase("listbigdecimal")) {
                attributeType = BigDecimal[].class;
            } else if (type.equalsIgnoreCase("listbiginteger")) {
                attributeType = BigInteger[].class;
            } else if (type.equalsIgnoreCase("listbyte")) {
                attributeType = byte[].class;
            } else if (type.equalsIgnoreCase("listchar")) {
                attributeType = char[].class;
            } else if (type.equalsIgnoreCase("listshort")) {
                attributeType = short[].class;
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributetype2", type), Issue.Level.SEVERE));
                return;
            }

            //Add to model
            ColumnDraft column = null;
            if ("node".equalsIgnoreCase(forStr) || "all".equalsIgnoreCase(forStr)) {
                if (container.getNodeColumn(id) != null) {
                    report.log(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributecolumn_exist", id));
                    return;
                }
                column = container.addNodeColumn(id, attributeType);
                column.setTitle(title);
                report.log(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_log_nodeattribute", title, attributeType.getCanonicalName()));
            } else if ("edge".equalsIgnoreCase(forStr) || "all".equalsIgnoreCase(forStr)) {
                if (container.getEdgeColumn(id) != null) {
                    report.log(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributecolumn_exist", id));
                    return;
                }
                column = container.addEdgeColumn(id, attributeType);
                column.setTitle(title);
                report.log(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_log_edgeattribute", title, attributeType.getCanonicalName()));
            }

            if (column != null && !defaultStr.isEmpty()) {
                try {
                    column.setDefaultValueString(defaultStr);
                    report.log(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_log_default", defaultStr, title));
                } catch (Exception e) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributedefault", title, attributeType.getCanonicalName()), Issue.Level.SEVERE));
                }
            }
        } else {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_attributeempty", title), Issue.Level.SEVERE));
        }
    }
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