Package org.gephi.io.importer.api

Examples of org.gephi.io.importer.api.Issue

436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
                if (parameters.isRemoveEdgeWithWeightZero()) {
                    String id = edge.getId();
                    String sourceTargetId = edge.getSource().getId() + "-" + edge.getTarget().getId();
                    edgeMap.remove(id);
                    edgeSourceTargetMap.remove(sourceTargetId);
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_Weight_Zero_Ignored", id), Level.SEVERE));
                }
            }
        }

        //Graph EdgeDefault
        if (directedEdgesCount > 0 && undirectedEdgesCount == 0) {
            parameters.setEdgeDefault(EdgeDefault.DIRECTED);
        } else if (directedEdgesCount == 0 && undirectedEdgesCount > 0) {
            parameters.setEdgeDefault(EdgeDefault.UNDIRECTED);
        } else if (directedEdgesCount > 0 && undirectedEdgesCount > 0) {
            parameters.setEdgeDefault(EdgeDefault.MIXED);
        }

        //Is dynamic graph
        for (NodeDraftImpl node : nodeMap.values()) {
            dynamicGraph = node.getTimeInterval() != null;
            if (dynamicGraph) {
                break;
            }
        }
        if (!dynamicGraph) {
            for (EdgeDraftImpl edge : edgeMap.values()) {
                dynamicGraph = edge.getTimeInterval() != null;
                if (dynamicGraph) {
                    break;
                }
            }
        }
        if (!dynamicGraph) {
            for (AttributeColumn col : attributeModel.getNodeTable().getColumns()) {
                dynamicGraph = col.getType().isDynamicType();
                if (dynamicGraph) {
                    break;
                }
            }
            for (AttributeColumn col : attributeModel.getEdgeTable().getColumns()) {
                dynamicGraph = col.getType().isDynamicType();
                if (dynamicGraph) {
                    break;
                }
            }
        }

        //Print time interval values to report
        if (timeIntervalMin != null || timeIntervalMax != null) {
            if (timeFormat.equals(TimeFormat.DATE)) {
                try {
                    String message = "[" + (timeIntervalMin != null ? DynamicUtilities.getXMLDateStringFromDouble(timeIntervalMin) : "-inf") + ",";
                    message += (timeIntervalMax != null ? DynamicUtilities.getXMLDateStringFromDouble(timeIntervalMax) : "+inf") + "]";
                    report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeInterval", message));
                } catch (Exception e) {
                }
            } else {
                String message = "[" + (timeIntervalMin != null ? timeIntervalMin.toString() : "-inf") + ",";
                message += (timeIntervalMax != null ? timeIntervalMax.toString() : "+inf") + "]";
                report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeInterval", message));
            }
        }

        //Print TimeFormat
        if (dynamicGraph) {
            report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeFormat", timeFormat.toString()));
        }

        //Remove overlapping
        if (dynamicGraph && parameters.isRemoveIntervalsOverlapping()) {
            for (NodeDraftImpl node : nodeMap.values()) {
                AttributeValue[] values = node.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        type = DynamicUtilities.removeOverlapping(type);
                        node.getAttributeRow().setValue(val.getColumn(), type);
                    }
                }
            }
            for (EdgeDraftImpl edge : edgeMap.values()) {
                AttributeValue[] values = edge.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        type = DynamicUtilities.removeOverlapping(type);
                        edge.getAttributeRow().setValue(val.getColumn(), type);
                    }
                }
            }
        }

        //Dynamic attributes bounds
        if (dynamicGraph && (timeIntervalMin != null || timeIntervalMax != null)) {
            for (NodeDraftImpl node : nodeMap.values()) {
                boolean issue = false;
                if (timeIntervalMin != null || timeIntervalMax != null) {
                    if (timeIntervalMin != null && node.getTimeInterval() != null && node.getTimeInterval().getLow() < timeIntervalMin) {
                        node.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(node.getTimeInterval(), timeIntervalMin, node.getTimeInterval().getHigh()));
                        issue = true;
                    }
                    if (timeIntervalMax != null && node.getTimeInterval() != null && node.getTimeInterval().getHigh() > timeIntervalMax) {
                        node.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(node.getTimeInterval(), node.getTimeInterval().getLow(), timeIntervalMax));
                        issue = true;
                    }
                    if (node.getTimeInterval() == null) {
                        node.setTimeInterval(new TimeInterval(timeIntervalMin, timeIntervalMax));
                    }
                }

                AttributeValue[] values = node.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        if (timeIntervalMin != null && type.getLow() < timeIntervalMin) {
                            if (!Double.isInfinite(type.getLow())) {
                                issue = true;
                            }
                            node.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, timeIntervalMin, type.getHigh()));
                        }
                        if (timeIntervalMax != null && type.getHigh() > timeIntervalMax) {
                            if (!Double.isInfinite(type.getHigh())) {
                                issue = true;
                            }
                            node.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, type.getLow(), timeIntervalMax));
                        }
                    }
                }
                if (issue) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_TimeIntervalVerify_Node_OutOfBound", node.getId()), Level.WARNING));
                }
            }
            for (EdgeDraftImpl edge : edgeMap.values()) {
                boolean issue = false;
                if (timeIntervalMin != null || timeIntervalMax != null) {
                    if (timeIntervalMin != null && edge.getTimeInterval() != null && edge.getTimeInterval().getLow() < timeIntervalMin) {
                        edge.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(edge.getTimeInterval(), timeIntervalMin, edge.getTimeInterval().getHigh()));
                        issue = true;
                    }
                    if (timeIntervalMax != null && edge.getTimeInterval() != null && edge.getTimeInterval().getHigh() > timeIntervalMax) {
                        edge.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(edge.getTimeInterval(), edge.getTimeInterval().getLow(), timeIntervalMax));
                        issue = true;
                    }
                    if (edge.getTimeInterval() == null) {
                        edge.setTimeInterval(new TimeInterval(timeIntervalMin, timeIntervalMax));
                    }
                }

                AttributeValue[] values = edge.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        if (timeIntervalMin != null && type.getLow() < timeIntervalMin) {
                            if (!Double.isInfinite(type.getLow())) {
                                issue = true;
                            }
                            edge.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, timeIntervalMin, type.getHigh()));
                        }
                        if (timeIntervalMax != null && type.getHigh() > timeIntervalMax) {
                            if (!Double.isInfinite(type.getHigh())) {
                                issue = true;
                            }
                            edge.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, type.getLow(), timeIntervalMax));
                        }
                    }
                }
                if (issue) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_TimeIntervalVerify_Edge_OutOfBound", edge.getId()), Level.WARNING));
                }
            }
        }

        return true;
View Full Code Here
773
774
775
776
777
778
779
        parameters.setSelfLoops(value);
    }

    public void setEdgeDefault(EdgeDefault edgeDefault) {
        parameters.setEdgeDefault(edgeDefault);
        report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_Set_EdgeDefault", edgeDefault.toString()), Level.INFO));
    }
View Full Code Here
87
88
89
90
91
92
93
94
95
96
97
98
99
100
                try {
                    connection.close();
                    report.log("Database connection terminated");
                } catch (Exception e) { /* ignore close errors */ }
            }
            report.logIssue(new Issue("Failed to connect at " + url, Issue.Level.CRITICAL, ex));
        }
        if (connection == null) {
            report.logIssue(new Issue("Failed to connect at " + url, Issue.Level.CRITICAL));
        }

        report.log(database.getPropertiesAssociations().getInfos());
        getNodes(connection);
        getEdges(connection);
View Full Code Here
112
113
114
115
116
117
118
119
120
121
122
        Statement s = connection.createStatement();
        try {
            s.executeQuery(database.getNodeQuery());
        } catch (SQLException ex) {
            report.logIssue(new Issue("Failed to execute Node query", Issue.Level.SEVERE, ex));
            return;
        }

        ResultSet rs = s.getResultSet();
        findNodeAttributesColumns(rs);
View Full Code Here
155
156
157
158
159
160
161
162
163
164
165
        Statement s = connection.createStatement();
        try {
            s.executeQuery(database.getEdgeQuery());
        } catch (SQLException ex) {
            report.logIssue(new Issue("Failed to execute Edge query", Issue.Level.SEVERE, ex));
            return;
        }
        ResultSet rs = s.getResultSet();
        findEdgeAttributesColumns(rs);
        AttributeTable edgeClass = container.getAttributeModel().getEdgeTable();
View Full Code Here
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
            case BOOLEAN:
                try {
                    boolean val = rs.getBoolean(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a BOOLEAN value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case DOUBLE:
                try {
                    double val = rs.getDouble(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a DOUBLE value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case FLOAT:
                try {
                    float val = rs.getFloat(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a FLOAT value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case INT:
                try {
                    int val = rs.getInt(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a INT value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case LONG:
                try {
                    long val = rs.getLong(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a LONG value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            default: //String
                try {
                    String val = rs.getString(columnIndex);
                    if (val != null) {
                        draft.addAttributeValue(column, val);
                    } else {
                        report.logIssue(new Issue("Failed to get a STRING value for node attribute '" + column.getId() + "'", Issue.Level.WARNING));
                    }
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a STRING value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
        }
    }
View Full Code Here
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
            case BOOLEAN:
                try {
                    boolean val = rs.getBoolean(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a BOOLEAN value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case DOUBLE:
                try {
                    double val = rs.getDouble(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a DOUBLE value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case FLOAT:
                try {
                    float val = rs.getFloat(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a FLOAT value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case INT:
                try {
                    int val = rs.getInt(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a INT value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case LONG:
                try {
                    long val = rs.getLong(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a LONG value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            default: //String
                try {
                    String val = rs.getString(columnIndex);
                    if (val != null) {
                        draft.addAttributeValue(column, val);
                    } else {
                        report.logIssue(new Issue("Failed to get a BOOLEAN value for edge attribute '" + column.getId() + "'", Issue.Level.WARNING));
                    }
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a STRING value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
        }
    }
View Full Code Here
426
427
428
429
430
431
432
433
434
435
436
                        break;
                    case Types.VARCHAR:
                        type = AttributeType.STRING;
                        break;
                    default:
                        report.logIssue(new Issue("Unknown SQL Type " + metaData.getColumnType(i + 1) + ", STRING used.", Issue.Level.WARNING));
                        break;
                }
                report.log("Node attribute found: " + columnName + "(" + type + ")");
                nodeClass.addColumn(columnName, type);
            }
View Full Code Here
471
472
473
474
475
476
477
478
479
480
481
                        break;
                    case Types.VARCHAR:
                        type = AttributeType.STRING;
                        break;
                    default:
                        report.logIssue(new Issue("Unknown SQL Type " + metaData.getColumnType(i + 1) + ", STRING used.", Issue.Level.WARNING));
                        break;
                }

                report.log("Edge attribute found: " + columnName + "(" + type + ")");
                edgeClass.addColumn(columnName, type);
View Full Code Here
90
91
92
93
94
95
96
97
98
        this.report = new Report();
        LineNumberReader lineReader = ImportUtils.getTextReader(reader);
        try {
            importData(lineReader);
        } catch (Exception e) {
            report.logIssue(new Issue(e, Issue.Level.SEVERE));
        }
        return !cancel;
    }
View Full Code Here
TOP

Related Classes of org.gephi.io.importer.api.Issue

  • org.gephi.blueprints.plugin.importer.GraphDbImporter
  • org.gephi.desktop.importer.ReportPanel$IssueRenderer
  • org.gephi.desktop.importer.ReportPanel$IssueRowModel
  • org.gephi.io.importer.impl.ImportContainerImpl
  • org.gephi.io.importer.plugin.database.ImporterEdgeList
  • org.gephi.io.importer.plugin.file.ImporterDL
  • org.gephi.io.importer.plugin.file.ImporterDOT
  • org.gephi.io.importer.plugin.file.ImporterGDF
  • org.gephi.io.importer.plugin.file.ImporterGEXF
  • org.gephi.io.importer.plugin.file.ImporterGML
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.