Package org.gephi.io.importer.api

Examples of org.gephi.io.importer.api.Issue

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                    break;
                case NODE_DATA:
                    // new node
                    split = split(line);
                    if (split.length != nodeDataColumns.length) {
                        report.logIssue(new Issue("Number of labels and number of data mismatch in: '" + line + "'", Issue.Level.WARNING));
                        break;
                    }
                    addNode(split);
                    // parse - if parse error => LOG error
                    break;
                case NODE_PROPERTIES:
                    split = split(line);
                    if (split.length != nodePropertiesLabels.length) {
                        report.logIssue(new Issue("Number of labels and number of data mismatch in: '" + line + "'", Issue.Level.WARNING));
                        break;
                    }
                    addNodeProperties(split);
                    // parse - if parse error => LOG error
                    break;
                case TIE_DATA:
                    split = split(line);
                    if (split.length != tieDataColumns.length) {
                        report.logIssue(new Issue("Number of labels and number of data mismatch in: '" + line + "'", Issue.Level.WARNING));
                        break;
                    }
                    addEdge(split);
                    // parse - if parse error => LOG error
                    break;
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                        node.setLabel(nodeProperties[i]);
                        break;
                }
            }
        } catch (NumberFormatException e) {
            report.logIssue(new Issue("Error parsing numerical value at '" + nodeProperties[i] + "'.", Issue.Level.WARNING));
        }
    }
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                            edge.addAttributeValue(tieDataColumns[i], edgeData[i]);
                            break;
                    }
                }
            } catch (NumberFormatException e) {
                report.logIssue(new Issue("Error parsing numerical value at '" + edgeData[i] + "'.", Issue.Level.WARNING));
            }
            container.addEdge(edge);
        }
    }
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                        } else if (count - 1 < nodeColumns.length) {
                            if (nodeColumns[count - 1] != null) {
                                setNodeData(node, nodeColumns[count - 1], data);
                            }
                        } else {
                            report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat7", id), Issue.Level.SEVERE));
                        }
                    }
                }
                count++;
            }

            container.addNode(node);

            Progress.progress(progressTicket);      //Progress
        }

        //Edges
        for (String edgeLine : edgeLines) {
            if (cancel) {
                return;
            }
            //Create Edge
            EdgeDraft edge = container.factory().newEdgeDraft();

            Matcher m = pattern.matcher(edgeLine);
            int count = 0;
            String id = "";
            while (m.find()) {
                int start = m.start();
                int end = m.end();
                if (start != end) {
                    String data = edgeLine.substring(start, end);
                    data = data.trim();
                    if (!data.isEmpty() && !data.toLowerCase().equals("null")) {
                        if (count == 0) {
                            NodeDraft nodeSource = container.getNode(data);
                            edge.setSource(nodeSource);
                            id = data;
                        } else if (count == 1) {
                            NodeDraft nodeTarget = container.getNode(data);
                            edge.setTarget(nodeTarget);
                            id += "," + data;
                        } else if (count - 2 < edgeColumns.length) {
                            if (edgeColumns[count - 2] != null) {
                                setEdgeData(edge, edgeColumns[count - 2], data);
                            }
                        } else {
                            report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat7", id), Issue.Level.SEVERE));
                        }
                    }
                }
                count++;
            }
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                            edgeLines.add(line);
                        }
                    }
                }
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat1"), Issue.Level.CRITICAL));
            }
        } else {
            report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat1"), Issue.Level.CRITICAL));
        }
    }
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            } catch (IndexOutOfBoundsException e) {
            }

            //Check error
            if (columnName.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat2"), Issue.Level.SEVERE));
                columnName = "default" + i;
            }
            if (typeString.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat6", columnName), Issue.Level.INFO));
                typeString = "varchar";
            }

            //Clean parenthesis
            typeString = typeString.replaceAll("\\([0-9]*\\)", "");

            if (typeString.equals("varchar")) {
                type = AttributeType.STRING;
            } else if (typeString.equals("bool")) {
                type = AttributeType.BOOLEAN;
            } else if (typeString.equals("boolean")) {
                type = AttributeType.BOOLEAN;
            } else if (typeString.equals("integer")) {
                type = AttributeType.INT;
            } else if (typeString.equals("tinyint")) {
                type = AttributeType.INT;
            } else if (typeString.equals("int")) {
                type = AttributeType.INT;
            } else if (typeString.equals("double")) {
                type = AttributeType.DOUBLE;
            } else if (typeString.equals("float")) {
                type = AttributeType.FLOAT;
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat5", typeString), Issue.Level.WARNING));
            }

            if (columnName.equals("x")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.X);
                report.log("Node property found: x");
            } else if (columnName.equals("y")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.Y);
                report.log("Node property found: y");
            } else if (columnName.equals("visible")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.VISIBLE);
                report.log("Node property found: visible");
            } else if (columnName.equals("color")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.COLOR);
                report.log("Node property found: color");
            } else if (columnName.equals("fixed")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.FIXED);
                report.log("Node property found: fixed");
            } else if (columnName.equals("style")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.STYLE);
                report.log("Node property found: style");
            } else if (columnName.equals("width")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.WIDTH);
                report.log("Node property found: width");
            } else if (columnName.equals("height")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.HEIGHT);
                report.log("Node property found: height");
            } else if (columnName.equals("label")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.LABEL);
                report.log("Node property found: label");
            } else if (columnName.equals("labelvisible")) {
                nodeColumns[i - 1] = new GDFColumn(GDFColumn.NodeGuessColumn.LABELVISIBLE);
                report.log("Node property found: labelvisible");
            } else {
                AttributeTable nodeClass = container.getAttributeModel().getNodeTable();
                if (!nodeClass.hasColumn(columnName)) {
                    AttributeColumn newColumn = nodeClass.addColumn(columnName, type);
                    nodeColumns[i - 1] = new GDFColumn(newColumn);
                    report.log("Node attribute " + columnName + " (" + type.getTypeString() + ")");
                } else {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat8", columnName), Issue.Level.SEVERE));
                }
            }
        }
    }
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            } catch (IndexOutOfBoundsException e) {
            }

            //Check error
            if (columnName.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat2"), Issue.Level.SEVERE));
                columnName = "default" + i;
            }
            if (typeString.isEmpty()) {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat6", columnName), Issue.Level.INFO));
                typeString = "varchar";
            }

            //Clean parenthesis
            typeString = typeString.replaceAll("\\([0-9]*\\)", "");

            if (typeString.equals("varchar")) {
                type = AttributeType.STRING;
            } else if (typeString.equals("bool")) {
                type = AttributeType.BOOLEAN;
            } else if (typeString.equals("boolean")) {
                type = AttributeType.BOOLEAN;
            } else if (typeString.equals("integer")) {
                type = AttributeType.INT;
            } else if (typeString.equals("tinyint")) {
                type = AttributeType.INT;
            } else if (typeString.equals("int")) {
                type = AttributeType.INT;
            } else if (typeString.equals("double")) {
                type = AttributeType.DOUBLE;
            } else if (typeString.equals("float")) {
                type = AttributeType.FLOAT;
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat5", typeString), Issue.Level.WARNING));
            }

            if (columnName.equals("color")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.COLOR);
                report.log("Edge property found: color");
            } else if (columnName.equals("visible")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.VISIBLE);
                report.log("Edge property found: visible");
            } else if (columnName.equals("weight")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.WEIGHT);
                report.log("Edge property found: weight");
            } else if (columnName.equals("directed")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.DIRECTED);
                report.log("Edge property found: directed");
            } else if (columnName.equals("label")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.LABEL);
                report.log("Edge property found: label");
            } else if (columnName.equals("labelvisible")) {
                edgeColumns[i - 2] = new GDFColumn(GDFColumn.EdgeGuessColumn.LABELVISIBLE);
                report.log("Edge property found: labelvisible");
            } else {
                AttributeTable edgeClass = container.getAttributeModel().getEdgeTable();
                if (!edgeClass.hasColumn(columnName)) {
                    AttributeColumn newColumn = edgeClass.addColumn(columnName, type);
                    edgeColumns[i - 2] = new GDFColumn(newColumn);
                    report.log("Edge attribute " + columnName + " (" + type.getTypeString() + ")");
                } else {
                    report.logIssue(new Issue(NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat9", columnName), Issue.Level.SEVERE));
                }
            }
        }
    }
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                        node.setVisible(Boolean.parseBoolean(data));
                        break;
                }
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat3", column.getNodeColumn(), node, data);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        } else if (column.getAttributeColumn() != null) {
            try {
                node.addAttributeValue(column.getAttributeColumn(), data);
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat4", column.getAttributeColumn().getType(), column.getAttributeColumn().getTitle(), node);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        }
    }
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                        edge.setLabelVisible(Boolean.parseBoolean(data));
                        break;
                }
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat3", column.getEdgeColumn(), data);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        } else if (column.getAttributeColumn() != null) {
            try {
                edge.addAttributeValue(column.getAttributeColumn(), data);
            } catch (Exception e) {
                String message = NbBundle.getMessage(ImporterGDF.class, "importerGDF_error_dataformat4", column.getAttributeColumn().getType(), column.getAttributeColumn().getTitle(), edge);
                report.logIssue(new Issue(message, Issue.Level.WARNING, e));
            }
        }
    }
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            if (defaultEdgeType.equalsIgnoreCase("undirected")) {
                container.setEdgeDefault(EdgeDefault.UNDIRECTED);
            } else if (defaultEdgeType.equalsIgnoreCase("directed")) {
                container.setEdgeDefault(EdgeDefault.DIRECTED);
            } else {
                report.logIssue(new Issue(NbBundle.getMessage(ImporterGraphML.class, "importerGraphML_error_defaultedgetype", defaultEdgeType), Issue.Level.SEVERE));
            }
        }
    }
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Related Classes of org.gephi.io.importer.api.Issue

  • org.gephi.blueprints.plugin.importer.GraphDbImporter
  • org.gephi.desktop.importer.ReportPanel$IssueRenderer
  • org.gephi.desktop.importer.ReportPanel$IssueRowModel
  • org.gephi.io.importer.impl.ImportContainerImpl
  • org.gephi.io.importer.plugin.database.ImporterEdgeList
  • org.gephi.io.importer.plugin.file.ImporterDL
  • org.gephi.io.importer.plugin.file.ImporterDOT
  • org.gephi.io.importer.plugin.file.ImporterGDF
  • org.gephi.io.importer.plugin.file.ImporterGEXF
  • org.gephi.io.importer.plugin.file.ImporterGML
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