Examples of org.apache.commons.math3.stat.inference.GTest

Package org.apache.commons.math3.stat.inference

Examples of org.apache.commons.math3.stat.inference.GTest

org.apache.commons.math3.exception.NotStrictlyPositiveException
kipedia.org/wiki/G-test">G Test statistics.
This is known in statistical genetics as the McDonald-Kreitman test. The implementation handles both known and unknown distributions.

Two samples tests can be used when the distribution is unknown a priori but provided by one sample, or when the hypothesis under test is that the two samples come from the same underlying distribution.
@since 3.1

     * #optimize(int,MultivariateVectorFunction,double[],double[],double[]) optimize} has not been
     * called.
     */
    public PointVectorValuePair[] getOptima() {
        if (optima == null) {
            throw new MathIllegalStateException(LocalizedFormats.NO_OPTIMUM_COMPUTED_YET);
        }
        return optima.clone();
    }

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     * @throws MathIllegalStateException if {@link #optimize(OptimizationData[])
     * optimize} has not been called.
     */
    public UnivariatePointValuePair[] getOptima() {
        if (optima == null) {
            throw new MathIllegalStateException(LocalizedFormats.NO_OPTIMUM_COMPUTED_YET);
        }
        return optima.clone();
    }

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                searchIntervalIndex = i;
                continue;
            }
        }
        if (maxEvalIndex == -1) {
            throw new MathIllegalStateException();
        }
        if (searchIntervalIndex == -1) {
            throw new MathIllegalStateException();
        }


        RuntimeException lastException = null;
        optima = new UnivariatePointValuePair[starts];
        totalEvaluations = 0;

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     * Throws IllegalStateException if n > 0.
     * @throws MathIllegalStateException if data has been added
     */
    private void checkEmpty() throws MathIllegalStateException {
        if (n > 0) {
            throw new MathIllegalStateException(
                LocalizedFormats.VALUES_ADDED_BEFORE_CONFIGURING_STATISTIC, n);
        }
    }

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     * #optimize(int,MultivariateFunction,GoalType,double[]) optimize}
     * has not been called.
     */
    public PointValuePair[] getOptima() {
        if (optima == null) {
            throw new MathIllegalStateException(LocalizedFormats.NO_OPTIMUM_COMPUTED_YET);
        }
        return optima.clone();
    }

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     * @throws MathUnsupportedOperationException in all cases
     */
    @Override
    public int getN()
        throws MathUnsupportedOperationException {
        throw new MathUnsupportedOperationException();
    }

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     * {@link #optimize(OptimizationData[]) optimize} method.
     */
    private void checkParameters() {
        if (getLowerBound() != null ||
            getUpperBound() != null) {
            throw new MathUnsupportedOperationException(LocalizedFormats.CONSTRAINT);
        }
    }

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        if (optimizer == null ||
            generator == null) {
            throw new NullArgumentException();
        }
        if (starts < 1) {
            throw new NotStrictlyPositiveException(starts);
        }


        this.optimizer = optimizer;
        this.starts = starts;
        this.generator = generator;

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                                   double inverseCumAccuracy)
        throws NotStrictlyPositiveException {
        super(rng);


        if (mean <= 0) {
            throw new NotStrictlyPositiveException(LocalizedFormats.MEAN, mean);
        }
        this.mean = mean;
        logMean = FastMath.log(mean);
        solverAbsoluteAccuracy = inverseCumAccuracy;
    }

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                                         final int starts,
                                         final RandomGenerator generator) {
        super(optimizer.getConvergenceChecker());


        if (starts < 1) {
            throw new NotStrictlyPositiveException(starts);
        }


        this.optimizer = optimizer;
        this.starts = starts;
        this.generator = generator;

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Related Classes of org.apache.commons.math3.stat.inference.GTest

org.apache.commons.math3.analysis.differentiation.DerivativeStructure

org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction

org.apache.commons.math3.analysis.function.HarmonicOscillator

org.apache.commons.math3.analysis.function.Sin

org.apache.commons.math3.analysis.function.Sinc

org.apache.commons.math3.analysis.MultivariateFunction

org.apache.commons.math3.analysis.QuinticFunction

org.apache.commons.math3.analysis.solvers.BrentSolver

org.apache.commons.math3.analysis.UnivariateFunction

org.apache.commons.math3.complex.Complex

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