Examples of org.apache.commons.math3.stat.correlation.Covariance

Package org.apache.commons.math3.stat.correlation

Examples of org.apache.commons.math3.stat.correlation.Covariance

org.apache.commons.math3.exception.MathIllegalStateException
Computes covariances for pairs of arrays or columns of a matrix.
The constructors that take RealMatrix or double[][] arguments generate covariance matrices. The columns of the input matrices are assumed to represent variable values.

The constructor argument biasCorrected determines whether or not computed covariances are bias-corrected.

Unbiased covariances are given by the formula
cov(X, Y) = Σ[(x_i - E(X))(y_i - E(Y))] / (n - 1) where E(X) is the mean of X and E(Y) is the mean of the Y values.
Non-bias-corrected estimates use n in place of n - 1 @since 2.0

     * @throws DimensionMismatchException if {@link #target} and
     * {@link #weightMatrix} have inconsistent dimensions.
     */
    private void checkParameters() {
        if (target.length != weightMatrix.getColumnDimension()) {
            throw new DimensionMismatchException(target.length,
                                                 weightMatrix.getColumnDimension());
        }
    }

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    public void increment(final double[] data)
        throws DimensionMismatchException {


        int length = data.length;
        if (length != dimension) {
            throw new DimensionMismatchException(length, dimension);
        }


        // only update the upper triangular part of the covariance matrix
        // as only these parts are actually stored
        for (int i = 0; i < length; i++){

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     * @throws DimensionMismatchException if the dimension of sc does not match this
     * @since 3.3
     */
    public void append(StorelessCovariance sc) throws DimensionMismatchException {
        if (sc.dimension != dimension) {
            throw new DimensionMismatchException(sc.dimension, dimension);
        }


        // only update the upper triangular part of the covariance matrix
        // as only these parts are actually stored
        for (int i = 0; i < dimension; i++) {

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            if (m.getColumnDimension() != m.getRowDimension()) {
                throw new NonSquareOperatorException(m.getColumnDimension(),
                                                     m.getRowDimension());
            }
            if (m.getRowDimension() != a.getRowDimension()) {
                throw new DimensionMismatchException(m.getRowDimension(),
                                                     a.getRowDimension());
            }
        }
    }

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   */
  public Rotation(Vector3D u, Vector3D v) throws MathArithmeticException {


    double normProduct = u.getNorm() * v.getNorm();
    if (normProduct == 0) {
        throw new MathArithmeticException(LocalizedFormats.ZERO_NORM_FOR_ROTATION_DEFINING_VECTOR);
    }


    double dot = u.dotProduct(v);


    if (dot < ((2.0e-15 - 1.0) * normProduct)) {

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     * @return the smallest prime greater than or equal to n.
     * @throws MathIllegalArgumentException if n &lt; 0.
     */
    public static int nextPrime(int n) {
        if (n < 0) {
            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 0);
        }
        if (n == 2) {
            return 2;
        }
        n |= 1;//make sure n is odd

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     * @throws MathIllegalArgumentException if n &lt; 2.
     */
    public static List<Integer> primeFactors(int n) {


        if (n < 2) {
            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 2);
        }
        // slower than trial div unless we do an awful lot of computation
        // (then it finally gets JIT-compiled efficiently
        // List<Integer> out = PollardRho.primeFactors(n);
        return SmallPrimes.trialDivision(n);

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   */
  public Rotation(Vector3D axis, double angle) throws MathIllegalArgumentException {


    double norm = axis.getNorm();
    if (norm == 0) {
      throw new MathIllegalArgumentException(LocalizedFormats.ZERO_NORM_FOR_ROTATION_AXIS);
    }


    double halfAngle = -0.5 * angle;
    double coeff = FastMath.sin(halfAngle) / norm;

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     * #optimize(int,MultivariateVectorFunction,double[],double[],double[]) optimize} has not been
     * called.
     */
    public PointVectorValuePair[] getOptima() {
        if (optima == null) {
            throw new MathIllegalStateException(LocalizedFormats.NO_OPTIMUM_COMPUTED_YET);
        }
        return optima.clone();
    }

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     * @throws MathIllegalStateException if {@link #optimize(OptimizationData[])
     * optimize} has not been called.
     */
    public UnivariatePointValuePair[] getOptima() {
        if (optima == null) {
            throw new MathIllegalStateException(LocalizedFormats.NO_OPTIMUM_COMPUTED_YET);
        }
        return optima.clone();
    }

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Related Classes of org.apache.commons.math3.stat.correlation.Covariance

org.apache.commons.math3.analysis.differentiation.DerivativeStructure

org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction

org.apache.commons.math3.analysis.function.HarmonicOscillator

org.apache.commons.math3.analysis.function.Sin

org.apache.commons.math3.analysis.function.Sinc

org.apache.commons.math3.analysis.MultivariateFunction

org.apache.commons.math3.analysis.QuinticFunction

org.apache.commons.math3.analysis.solvers.BrentSolver

org.apache.commons.math3.analysis.UnivariateFunction

org.apache.commons.math3.complex.Complex

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