Package org.apache.commons.math3.optim

Examples of org.apache.commons.math3.optim.SimpleValueChecker

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        SiteWithPolynomial nearSite = nearestSites.get(row);
        DefaultPolynomial.populateMatrix(matrix, row, nearSite.pos.x, nearSite.pos.z);
        vector.setEntry(row, nearSite.pos.y);
      }
     
      QRDecomposition qr = new QRDecomposition(matrix);
      RealVector solution = qr.getSolver().solve(vector);
       
      double[] coeffs = solution.toArray();
     
      for (double coeff : coeffs) {
        if (coeff > 10e3) {
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     * if the covariance matrix cannot be computed (singular problem).
     */
    public double[][] computeCovariances(double[] params,
                                         double threshold) {
        // Set up the Jacobian.
        final RealMatrix j = computeWeightedJacobian(params);

        // Compute transpose(J)J.
        final RealMatrix jTj = j.transpose().multiply(j);

        // Compute the covariances matrix.
        final DecompositionSolver solver
            = new QRDecomposition(jTj, threshold).getSolver();
        return solver.getInverse().getData();
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     * @return the square-root of the weight matrix.
     */
    private RealMatrix squareRoot(RealMatrix m) {
        if (m instanceof DiagonalMatrix) {
            final int dim = m.getRowDimension();
            final RealMatrix sqrtM = new DiagonalMatrix(dim);
            for (int i = 0; i < dim; i++) {
                sqrtM.setEntry(i, i, FastMath.sqrt(m.getEntry(i, i)));
            }
            return sqrtM;
        } else {
            final EigenDecomposition dec = new EigenDecomposition(m);
            return dec.getSquareRoot();
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      List<SiteWithPolynomial> nearestSites =
          nearestSiteMap.get(site);
     
      RealVector vector = new ArrayRealVector(SITES_FOR_APPROX);
      RealMatrix matrix = new Array2DRowRealMatrix(
          SITES_FOR_APPROX, DefaultPolynomial.NUM_COEFFS);
     
      for (int row = 0; row < SITES_FOR_APPROX; row++) {
        SiteWithPolynomial nearSite = nearestSites.get(row);
        DefaultPolynomial.populateMatrix(matrix, row, nearSite.pos.x, nearSite.pos.z);
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    for (SiteWithPolynomial site : sites) {
     
      List<SiteWithPolynomial> nearestSites =
          nearestSiteMap.get(site);
     
      RealVector vector = new ArrayRealVector(SITES_FOR_APPROX);
      RealMatrix matrix = new Array2DRowRealMatrix(
          SITES_FOR_APPROX, DefaultPolynomial.NUM_COEFFS);
     
      for (int row = 0; row < SITES_FOR_APPROX; row++) {
        SiteWithPolynomial nearSite = nearestSites.get(row);
        DefaultPolynomial.populateMatrix(matrix, row, nearSite.pos.x, nearSite.pos.z);
        vector.setEntry(row, nearSite.pos.y);
      }
     
      QRDecomposition qr = new QRDecomposition(matrix);
      RealVector solution = qr.getSolver().solve(vector);
       
      double[] coeffs = solution.toArray();
     
      for (double coeff : coeffs) {
        if (coeff > 10e3) {
          continue calculatePolynomials;
        }
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                return Double.compare(weightedResidual(o1),
                                      weightedResidual(o2));
            }

            private double weightedResidual(final PointVectorValuePair pv) {
                final RealVector v = new ArrayRealVector(pv.getValueRef(), false);
                final RealVector r = target.subtract(v);
                return r.dotProduct(weight.operate(r));
            }
        };
    }
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    /**
     * @param rel Relative threshold.
     * @param abs Absolute threshold.
     */
    public SimplexOptimizer(double rel, double abs) {
        this(new SimpleValueChecker(rel, abs));
    }
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    public void testBoundsUnsupported() {
        LinearProblem problem
            = new LinearProblem(new double[][] { { 2 } }, new double[] { 3 });
        NonLinearConjugateGradientOptimizer optimizer
            = new NonLinearConjugateGradientOptimizer(NonLinearConjugateGradientOptimizer.Formula.POLAK_RIBIERE,
                                                      new SimpleValueChecker(1e-6, 1e-6),
                                                      1e-3, 1e-3, 1);
        optimizer.optimize(new MaxEval(100),
                           problem.getObjectiveFunction(),
                           problem.getObjectiveFunctionGradient(),
                           GoalType.MINIMIZE,
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    public void testTrivial() {
        LinearProblem problem
            = new LinearProblem(new double[][] { { 2 } }, new double[] { 3 });
        NonLinearConjugateGradientOptimizer optimizer
            = new NonLinearConjugateGradientOptimizer(NonLinearConjugateGradientOptimizer.Formula.POLAK_RIBIERE,
                                                      new SimpleValueChecker(1e-6, 1e-6),
                                                      1e-3, 1e-3, 1);
        PointValuePair optimum
            = optimizer.optimize(new MaxEval(100),
                                 problem.getObjectiveFunction(),
                                 problem.getObjectiveFunctionGradient(),
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            = new LinearProblem(new double[][] { { 1.0, -1.0 }, { 0.0, 2.0 }, { 1.0, -2.0 } },
                                new double[] { 4.0, 6.0, 1.0 });

        NonLinearConjugateGradientOptimizer optimizer
            = new NonLinearConjugateGradientOptimizer(NonLinearConjugateGradientOptimizer.Formula.POLAK_RIBIERE,
                                                      new SimpleValueChecker(1e-6, 1e-6),
                                                      1e-3, 1e-3, 1);
        PointValuePair optimum
            = optimizer.optimize(new MaxEval(100),
                                 problem.getObjectiveFunction(),
                                 problem.getObjectiveFunctionGradient(),
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Related Classes of org.apache.commons.math3.optim.SimpleValueChecker

  • org.apache.commons.math3.analysis.differentiation.DerivativeStructure
  • org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction
  • org.apache.commons.math3.analysis.function.HarmonicOscillator
  • org.apache.commons.math3.analysis.function.Sin
  • org.apache.commons.math3.analysis.function.Sinc
  • org.apache.commons.math3.analysis.MultivariateFunction
  • org.apache.commons.math3.analysis.QuinticFunction
  • org.apache.commons.math3.analysis.solvers.BrentSolver
  • org.apache.commons.math3.analysis.UnivariateFunction
  • org.apache.commons.math3.complex.Complex
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