Package org.apache.airavata.client.api

Examples of org.apache.airavata.client.api.AiravataAPI

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  }

    public void shutDown(ConfigurationContext configctx, AxisService service) {
        URI gfacURL = (URI) configctx.getProperty(SERVICE_URL);
        if (getAiravataAPI() != null && thread != null) {
            AiravataAPI registry = getAiravataAPI();
            try {
                registry.getAiravataManager().removeWorkflowInterpreterURI(gfacURL);
            } catch (AiravataAPIInvocationException e) {
                e.printStackTrace();
            }
            thread.interrupt();
            try {
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        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);
        verifyOutput(experimentId, outputValue);
    }

    protected void verifyOutput(String experimentId, List<String> outputVerifyingString) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        log.info("Experiment ID Returned : " + experimentId);

        ExperimentData experimentData = airavataAPI.getProvenanceManager().getExperimentData(experimentId);

        log.info("Verifying output ...");

        List<WorkflowExecutionDataImpl> workflowInstanceData = experimentData.getWorkflowExecutionDataList();
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            }
        }
    }

    private List<WorkflowInput> setupInputs(Workflow workflow, List<String> inputValues) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = airavataAPI.getWorkflowManager().getWorkflowInputs(workflow.getName());

        Assert.assertEquals(workflowInputs.size(), inputValues.size());

        int i = 0;
        for (String valueString : inputValues) {
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  }

    public void execute(JobExecutionContext jobExecutionContext) throws GFacProviderException {
      GFacUtils.updateApplicationJobStatus(jobExecutionContext, jobId, ApplicationJobStatus.INITIALIZE);
        String shellCmd = createShellCmd(jobExecutionContext);
        AiravataAPI airavataAPI = jobExecutionContext.getGFacConfiguration().getAiravataAPI();
        if (airavataAPI!=null){
          try {
        airavataAPI.getProvenanceManager().updateApplicationJobData(jobId, shellCmd);
      } catch (AiravataAPIInvocationException e) {
        log.error("Error in saving EC2 shell command!!!", e);
      }
        }
        SshClient sshClient = new SshClient();
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                    runner = new PredicatedTaskRunner(provenanceWriterThreadPoolSize);
                    try {
                            List<HostDescription> hostList = getDefinedHostDescriptions();
                            for(HostDescription host:hostList){
                                // This will avoid the changes user is doing to one of the predefined Hosts during a restart of the system
                                AiravataAPI registry = getAiravataAPI();
                if(!registry.getApplicationManager().isHostDescriptorExists(host.getType().getHostName())){
                                    log.debug("Saving the predefined Host: " + host.getType().getHostName());
                                    registry.getApplicationManager().addHostDescription(host);
                                }
                            }
                    } catch (DescriptorAlreadyExistsException e) {
                            e.printStackTrace();
                        } catch (AiravataAPIInvocationException e) {
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        } catch (URISyntaxException e1) {
            throw new WorkflowRuntimeException(e1);
        }
        WorkflowInterpretorEventListener listener = null;
        WorkflowInterpreter interpreter = null;
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(gatewayId, username);
    WorkflowInterpreterConfiguration workflowInterpreterConfiguration = new WorkflowInterpreterConfiguration(workflow,topic,conf.getMessageBoxURL(), conf.getBrokerURL(), airavataAPI, conf, null, null);
        workflowInterpreterConfiguration.setGfacEmbeddedMode(gfacEmbeddedMode);
        workflowInterpreterConfiguration.setActOnProvenance(provenance);

        if (builder.getSecurityContext().getAmazonWebservices() != null) {
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  }

    public void shutDown(ConfigurationContext configctx, AxisService service) {
        URI gfacURL = (URI) configctx.getProperty(SERVICE_URL);
        if (getAiravataAPI() != null && thread != null) {
            AiravataAPI registry = getAiravataAPI();
            try {
                registry.getAiravataManager().removeWorkflowInterpreterURI(gfacURL);
            } catch (AiravataAPIInvocationException e) {
                e.printStackTrace();
            }
            thread.interrupt();
            try {
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            this.workflowInterpreterTextField.setText(workflowInterpreterURL.toString());
        } else {
            this.workflowInterpreterTextField.setText(XBayaConstants.DEFAULT_WORKFLOW_INTERPRETER_URL);
        }

        AiravataAPI airavataAPI = config.getAiravataAPI();
        if (null != airavataAPI) {
            this.RegistryTextField.setText(config.getRegistryURL());
        } else {
            this.RegistryTextField.setText(XBayaConstants.REGISTRY_URL.toASCIIString());
        }
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                    List<WorkflowInput> workflowInputs=new ArrayList<WorkflowInput>();
                    for (int i = 0; i < inputNodes.size(); i++) {
                      InputNode inputNode = inputNodes.get(i);
                      workflowInputs.add(new WorkflowInput(inputNode.getID(), inputNode.getDefaultValue().toString()));
                    }
                    AiravataAPI api = engine.getConfiguration().getAiravataAPI();
                   
                    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions(instanceNameFinal, api.getCurrentUser(), null);
                    if (AmazonCredential.getInstance().getAwsAccessKeyId() != null) {
                        options.getCustomSecuritySettings().getAmazonWSSettings().setAccessKeyId(AmazonCredential.getInstance().getAwsAccessKeyId());
                        options.getCustomSecuritySettings().getAmazonWSSettings().setSecretAccessKey(AmazonCredential.getInstance().getAwsSecretAccessKey());
                    }

                    //TODO get the token id from UI
                    // For the moment hard code it
                    // TODO Build UI to get the token id
                    //options.getCustomSecuritySettings().getCredentialStoreSecuritySettings().setTokenId("1234");


                    String experimentId = api.getExecutionManager().runExperiment(api.getWorkflowManager().getWorkflowAsString(workflow), workflowInputs,options);
                    try {
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().getConfiguration().setTopic(experimentId);
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().start();
                    } catch (MonitorException e1) {
                        WorkflowInterpreterLaunchWindow.this.engine.getGUI().getErrorWindow().error(e1);
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  public void setGateway(String gateway) {
    this.gateway = gateway;
  }
 
  public static void main(String[] args) throws Exception {
    AiravataAPI api = AiravataAPIFactory.getAPI(new URI("http://localhost:8080/airavata/services/registry"), "default", "admin", new PasswordCallBackImpl("admin", "admin"));
    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions();
    options.getCustomWorkflowSchedulingSettings().addNewNodeSettings("data1", "comma_app", 1, 1);
    String workflow = "Workflow3";
    List<WorkflowInput> inputs = api.getWorkflowManager().getWorkflowInputs(workflow);
    System.out.println(api.getExecutionManager().runExperiment(workflow, inputs,options));
  }
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Related Classes of org.apache.airavata.client.api.AiravataAPI

  • org.apache.airavata.api.samples.ExperimentSample
  • org.apache.airavata.client.AiravataAPIFactory
  • org.apache.airavata.client.AiravataClient
  • org.apache.airavata.client.samples.CreateLaunchExperiment
  • org.apache.airavata.client.samples.CreateLaunchExperimentUS3
  • org.apache.airavata.client.samples.MonitorWorkflow
  • org.apache.airavata.client.samples.TestCreateLaunchExperiment
  • org.apache.airavata.core.gfac.extension.post.OutputRegister
  • org.apache.airavata.core.gfac.scheduler.impl.SchedulerImpl
  • org.apache.airavata.gfac.client.GfacClientFactoryTest
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