Package org.apache.airavata.client.api

Examples of org.apache.airavata.client.api.AiravataAPI

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            this.workflowInterpreterTextField.setText(workflowInterpreterURL.toString());
        } else {
            this.workflowInterpreterTextField.setText(XBayaConstants.DEFAULT_WORKFLOW_INTERPRETER_URL);
        }

        AiravataAPI airavataAPI = config.getAiravataAPI();
        if (null != airavataAPI) {
            this.RegistryTextField.setText(config.getRegistryURL());
        } else {
            this.RegistryTextField.setText(XBayaConstants.REGISTRY_URL.toASCIIString());
        }
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                    List<WorkflowInput> workflowInputs=new ArrayList<WorkflowInput>();
                    for (int i = 0; i < inputNodes.size(); i++) {
                      InputNode inputNode = inputNodes.get(i);
                      workflowInputs.add(new WorkflowInput(inputNode.getID(), inputNode.getDefaultValue().toString()));
                    }
                    AiravataAPI api = engine.getConfiguration().getAiravataAPI();
                   
                    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions(instanceNameFinal, api.getCurrentUser(), null);
                    if (AmazonCredential.getInstance().getAwsAccessKeyId() != null) {
                        options.getCustomSecuritySettings().getAmazonWSSettings().setAccessKeyId(AmazonCredential.getInstance().getAwsAccessKeyId());
                        options.getCustomSecuritySettings().getAmazonWSSettings().setSecretAccessKey(AmazonCredential.getInstance().getAwsSecretAccessKey());
                    }

                    //TODO get the token id from UI
                    // For the moment hard code it
                    // TODO Build UI to get the token id
                    //options.getCustomSecuritySettings().getCredentialStoreSecuritySettings().setTokenId("1234");


                    String experimentId = api.getExecutionManager().runExperiment(api.getWorkflowManager().getWorkflowAsString(workflow), workflowInputs,options);
                    try {
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().getConfiguration().setTopic(experimentId);
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().start();
                    } catch (MonitorException e1) {
                        WorkflowInterpreterLaunchWindow.this.engine.getGUI().getErrorWindow().error(e1);
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        } catch (URISyntaxException e) {
            this.engine.getGUI().getErrorWindow().error(ErrorMessages.URL_WRONG, e);
            return;
        }

        AiravataAPI airavataAPI = getAiravataAPI();

//        JCRComponentRegistry registry = null;
//        try {
//            registry = new JCRComponentRegistry(airavataAPI);
//        } catch (Exception e) {
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    public AiravataAPI getAiravataAPI(){
        try {
            URI regURI = new URI(getRegURL());
            PasswordCallbackImpl passwordCallback = new PasswordCallbackImpl(userName, password);
            AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(regURI, getGateway(), userName, passwordCallback);
            return airavataAPI;
        } catch (URISyntaxException e) {
            e.printStackTrace();
        }catch (AiravataAPIInvocationException e) {
            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
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    setRegistryURL(createRegistryURL());

        log("Configurations - Registry URL : " + getRegistryURL());

        PasswordCallback passwordCallback = new PasswordCallbackImpl();
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                passwordCallback);

        checkServerStartup(airavataAPI);

        log("Server successfully started .............................");
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    runWorkFlow(workflow, inputs,outputs);
  }

    protected void runWorkFlow(Workflow workflow, List<String> inputValues, Object outputValue) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);

        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options);

        Assert.assertNotNull(experimentId);

        log.info("Run workflow completed ....");

        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);
        verifyOutput(experimentId, outputValue);
    }
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        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);
        verifyOutput(experimentId, outputValue);
    }

    protected void verifyOutput(String experimentId, Object outputVerifyingString) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        log.info("Experiment ID Returned : " + experimentId);

        ExperimentData experimentData = airavataAPI.getProvenanceManager().getExperimentData(experimentId);

        log.info("Verifying output ...");

        List<WorkflowExecutionDataImpl> workflowInstanceData = experimentData.getWorkflowExecutionDataList();
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            }
        }
    }

    private List<WorkflowInput> setupInputs(Workflow workflow, List<String> inputValues) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = airavataAPI.getWorkflowManager().getWorkflowInputs(workflow.getName());

        Assert.assertEquals(workflowInputs.size(), inputValues.size());

        int i = 0;
        for (String valueString : inputValues) {
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    setRegistryURL(createRegistryURL());

        log("Configurations - Registry URL : " + getRegistryURL());

        PasswordCallback passwordCallback = new PasswordCallbackImpl();
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                passwordCallback);

        checkServerStartup(airavataAPI);

        log("Server successfully started .............................");
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                serviceDescription2.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription2.getType().getApplicationName().getStringValue()));
  }

    protected void runWorkFlow(Workflow workflow, List<String> inputValues, List<String> outputValue) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);

        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options);

        Assert.assertNotNull(experimentId);

        log.info("Run workflow completed ....");

        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);
        verifyOutput(experimentId, outputValue);
    }
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Related Classes of org.apache.airavata.client.api.AiravataAPI

  • org.apache.airavata.api.samples.ExperimentSample
  • org.apache.airavata.client.AiravataAPIFactory
  • org.apache.airavata.client.AiravataClient
  • org.apache.airavata.client.samples.CreateLaunchExperiment
  • org.apache.airavata.client.samples.CreateLaunchExperimentUS3
  • org.apache.airavata.client.samples.MonitorWorkflow
  • org.apache.airavata.client.samples.TestCreateLaunchExperiment
  • org.apache.airavata.core.gfac.extension.post.OutputRegister
  • org.apache.airavata.core.gfac.scheduler.impl.SchedulerImpl
  • org.apache.airavata.gfac.client.GfacClientFactoryTest
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