Package com.compomics.util.gui.waiting.waitinghandlers

Examples of com.compomics.util.gui.waiting.waitinghandlers.ProgressDialogX

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    /**
     * Displays the results in the panel.
     */
    public void displayResults() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setPrimaryProgressCounterIndeterminate(true);
        progressDialog.setTitle("Loading Data. Please Wait...");
View Full Code Here
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    /**
     * Method called whenever the file selection changed.
     */
    private void fileSelectionChanged() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setPrimaryProgressCounterIndeterminate(true);
        progressDialog.setTitle("Updating Spectrum Table. Please Wait...");
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            if (selectedFile != null) {
                try {
                    final BufferedWriter writer = new BufferedWriter(new FileWriter(selectedFile));

                    progressDialog = new ProgressDialogX(peptideShakerGUI,
                            Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                            Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                            true);
                    progressDialog.setPrimaryProgressCounterIndeterminate(true);
                    progressDialog.setTitle("Copying to File. Please Wait...");
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            if (newWindow < 0) {
                JOptionPane.showMessageDialog(this, "Please verify the given window size. Has to be a positive value.", "Window Error", JOptionPane.WARNING_MESSAGE);
            } else {
                currentTargetDecoyMap.setWindowSize(newWindow);

                progressDialog = new ProgressDialogX(peptideShakerGUI,
                        Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                        Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                        true);
                progressDialog.setTitle("Recalculating. Please Wait...");
                progressDialog.setPrimaryProgressCounterIndeterminate(false);
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        if (lastThreshold < 0 || lastThreshold > 100) {
            JOptionPane.showMessageDialog(this, "Please verify the given threshold. Interval: [0, 100].", "Threshold Error", JOptionPane.WARNING_MESSAGE);
        } else {

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setTitle("Recalculating. Please Wait...");
            progressDialog.setPrimaryProgressCounterIndeterminate(false);
View Full Code Here
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    /**
     * This method displays results on the panel
     */
    public void displayResults() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setPrimaryProgressCounterIndeterminate(true);
        progressDialog.setTitle("Updating Validation Data. Please Wait...");
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    /**
     * Recalculates probabilities for peptides and proteins.
     */
    private void recalculatePeptidesAndProteins() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setTitle("Recalculating. Please Wait...");
        progressDialog.setPrimaryProgressCounterIndeterminate(false);
View Full Code Here
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    /**
     * Recalculates probabilities for proteins only.
     */
    private void recalculateProteins() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setTitle("Recalculating. Please Wait...");
        progressDialog.setPrimaryProgressCounterIndeterminate(false);
View Full Code Here
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    /**
     * Apply the new protein settings.
     */
    private void applyProteins() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setTitle("Recalculating. Please Wait...");
        progressDialog.setPrimaryProgressCounterIndeterminate(false);
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        // set main table properties
        proteinTable.getTableHeader().setReorderingAllowed(false);

        // set the row sorter
        SelfUpdatingTableModel.addSortListener(proteinTable, new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true));

        // add scrolling listeners
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Related Classes of com.compomics.util.gui.waiting.waitinghandlers.ProgressDialogX

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  • eu.isas.peptideshaker.gui.exportdialogs.FeaturesPreferencesDialog
  • eu.isas.peptideshaker.gui.exportdialogs.FollowupPreferencesDialog
  • eu.isas.peptideshaker.gui.exportdialogs.InclusionListExportDialog
  • eu.isas.peptideshaker.gui.exportdialogs.MethodsSectionDialog
  • eu.isas.peptideshaker.gui.exportdialogs.MzIdentMLExportDialog
  • eu.isas.peptideshaker.gui.NewDialog
  • eu.isas.peptideshaker.gui.PeptideShakerGUI
  • eu.isas.peptideshaker.gui.preferencesdialogs.ProjectDetailsDialog
  • eu.isas.peptideshaker.gui.pride.DatabaseHelpDialog
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