Package com.compomics.util.gui.waiting.waitinghandlers

Examples of com.compomics.util.gui.waiting.waitinghandlers.ProgressDialogX

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    /**
     * Tries to find the last selected peptide.
     */
    public void updateSelection() {

        progressDialog = new ProgressDialogX(peptideShakerGUI,
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                true);
        progressDialog.setPrimaryProgressCounterIndeterminate(true);
        progressDialog.setTitle("Updating Selection. Please Wait...");
View Full Code Here
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                || tableIndex == TableIndex.RELATED_PSMS_TABLE
                || tableIndex == TableIndex.PTM_TABLE
                || tableIndex == TableIndex.A_SCORES_TABLE
                || tableIndex == TableIndex.DELTA_SCORES_TABLE) {

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Copying to File/Clipboard. Please Wait...");
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        if ((proteinSpectrumCountingScoreJRadioButton.isSelected() && currentProteinPlotType != PlotType.Protein_MS2_QuantScores)
                || (proteinSequenceCoverageJRadioButton.isSelected() && currentProteinPlotType != PlotType.Protein_Sequence_Coverage)
                || (proteinNumberValidatedPeptidesJRadioButton.isSelected() && currentProteinPlotType != PlotType.Protein_Validated_Peptides)
                || (proteinSequenceLengthJRadioButton.isSelected() && currentProteinPlotType != PlotType.Protein_Sequence_Length)) {

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Loading QC Plot. Please Wait...");
View Full Code Here
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        // see if we need to update
        if ((peptideValidatedPsmsJRadioButton.isSelected() && currentPeptidePlotType != PlotType.Peptide_Validated_PSMs)
                || (peptideMissedCleavagesJRadioButton.isSelected() && currentPeptidePlotType != PlotType.Peptide_Missed_Cleavages)
                || (peptideLengthJRadioButton.isSelected() && currentPeptidePlotType != PlotType.Peptide_Length)) {

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Loading QC Plot. Please Wait...");
View Full Code Here
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        // see if we need to update
        if ((psmPrecursorMassErrorJRadioButton.isSelected() && currentPsmPlotType != PlotType.PSM_Precursor_Mass_Error)
                || (psmPrecursorChargeJRadioButton.isSelected() && currentPsmPlotType != PlotType.PSM_Precursor_Charge)) {

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Loading QC Plot. Please Wait...");
View Full Code Here
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                }

                if (outcome == JOptionPane.YES_OPTION) {
                    dispose();

                    progressDialog = new ProgressDialogX(this, followupPreferencesDialog.getPeptideShakerGUI(),
                            Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                            Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                            true);
                    progressDialog.setPrimaryProgressCounterIndeterminate(true);
                    progressDialog.setTitle("Exporting. Please Wait...");
View Full Code Here
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        if (selectedFolder != null) {

            peptideShakerGUI.setLastSelectedFolder(selectedFolder.getAbsolutePath());

            progressDialog = new ProgressDialogX(this, peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Exporting Spectra. Please Wait...");
View Full Code Here
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            finalOutputFile = peptideShakerGUI.getUserSelectedFile(".txt", "(Tab Separated Text File) *.txt", "Select Destination File", false);
        }

        if (finalOutputFile != null) {

            progressDialog = new ProgressDialogX(this, peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Exporting PSMs. Please Wait...");
View Full Code Here
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        if (selectedFolder != null) {

            peptideShakerGUI.setLastSelectedFolder(selectedFolder.getAbsolutePath());

            progressDialog = new ProgressDialogX(peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Exporting. Please Wait...");
View Full Code Here
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        final File finalOutputFile = peptideShakerGUI.getUserSelectedFile(".txt", "(Tab Separated Text File) *.txt", "Select Destination File", false);

        if (finalOutputFile != null) {

            progressDialog = new ProgressDialogX(this, peptideShakerGUI,
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker.gif")),
                    Toolkit.getDefaultToolkit().getImage(getClass().getResource("/icons/peptide-shaker-orange.gif")),
                    true);
            progressDialog.setPrimaryProgressCounterIndeterminate(true);
            progressDialog.setTitle("Exporting PSMs. Please Wait...");
View Full Code Here
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Related Classes of com.compomics.util.gui.waiting.waitinghandlers.ProgressDialogX

  • eu.isas.peptideshaker.export.OutputGenerator
  • eu.isas.peptideshaker.gui.exportdialogs.FeaturesPreferencesDialog
  • eu.isas.peptideshaker.gui.exportdialogs.FollowupPreferencesDialog
  • eu.isas.peptideshaker.gui.exportdialogs.InclusionListExportDialog
  • eu.isas.peptideshaker.gui.exportdialogs.MethodsSectionDialog
  • eu.isas.peptideshaker.gui.exportdialogs.MzIdentMLExportDialog
  • eu.isas.peptideshaker.gui.NewDialog
  • eu.isas.peptideshaker.gui.PeptideShakerGUI
  • eu.isas.peptideshaker.gui.preferencesdialogs.ProjectDetailsDialog
  • eu.isas.peptideshaker.gui.pride.DatabaseHelpDialog
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