Examples of ApplicationDescription


Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        registry.removeApplicationDescriptor("testService", "testHost", "testApplication");
    }


    public void testGetApplicationDescriptorsForServiceAndHost() throws Exception {
        ApplicationDescription applicationDescription = new ApplicationDescription(ApplicationDeploymentDescriptionType.type);
        ApplicationDeploymentDescriptionType.ApplicationName applicationName = applicationDescription.getType().addNewApplicationName();
        applicationName.setStringValue("testApplication");
        applicationDescription.getType().setApplicationName(applicationName);
        applicationDescription.getType().setInputDataDirectory("/bin");
        applicationDescription.getType().setExecutableLocation("/bin/echo");
        applicationDescription.getType().setOutputDataDirectory("/tmp");

        registry.addApplicationDescriptor("testService", "testHost", applicationDescription);

        ApplicationDescription description = registry.getApplicationDescriptors("testService", "testHost");
        assertNotNull("application descriptor retrieved successfully", description);
        registry.removeApplicationDescriptor("testService", "testHost", "testApplication");
    }
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        assertNotNull("application descriptor retrieved successfully", description);
        registry.removeApplicationDescriptor("testService", "testHost", "testApplication");
    }

    public void testGetApplicationDescriptorsForService() throws Exception {
        ApplicationDescription applicationDescription = new ApplicationDescription(ApplicationDeploymentDescriptionType.type);
        ApplicationDeploymentDescriptionType.ApplicationName applicationName = applicationDescription.getType().addNewApplicationName();
        applicationName.setStringValue("testApplication");
        applicationDescription.getType().setApplicationName(applicationName);
        applicationDescription.getType().setInputDataDirectory("/bin");
        applicationDescription.getType().setExecutableLocation("/bin/echo");
        applicationDescription.getType().setOutputDataDirectory("/tmp");

        registry.addApplicationDescriptor("testService", "testHost1", applicationDescription);
        registry.addApplicationDescriptor("testService", "testHost2", applicationDescription);

        Map<String,ApplicationDescription> applicationDescriptors = registry.getApplicationDescriptors("testService");
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        registry.removeApplicationDescriptor("testService", "testHost2", "testApplication");
    }


    public void testGetApplicationDescriptors() throws Exception {
        ApplicationDescription applicationDescription = new ApplicationDescription(ApplicationDeploymentDescriptionType.type);
        ApplicationDeploymentDescriptionType.ApplicationName applicationName = applicationDescription.getType().addNewApplicationName();
        applicationName.setStringValue("testApplication");
        applicationDescription.getType().setApplicationName(applicationName);
        applicationDescription.getType().setInputDataDirectory("/bin");
        applicationDescription.getType().setExecutableLocation("/bin/echo");
        applicationDescription.getType().setOutputDataDirectory("/tmp");

        registry.addApplicationDescriptor("testService", "testHost1", applicationDescription);
        registry.addApplicationDescriptor("testService", "testHost2", applicationDescription);

        Map<String[], ApplicationDescription> applicationDescriptors = registry.getApplicationDescriptors();
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription


        /*
        * App
        */
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(1);
        app.setNodeCount(1);
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue("EchoLocal");
        app.setExecutableLocation("/bin/echo");
        app.setScratchWorkingDirectory(properties.getProperty("scratch.working.directory"));
        app.setCpuCount(1);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(properties.getProperty("allocation.charge.number"));
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(properties.getProperty("defualt.queue"));
        app.setMaxMemory(100);
       
        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("SimpleEcho");

        InputParameterType input = InputParameterType.Factory.newInstance();
        ParameterType parameterType = input.addNewParameterType();
        parameterType.setName("echo_input");
        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        OutputParameterType output = OutputParameterType.Factory.newInstance();
        ParameterType parameterType1 = output.addNewParameterType();
        parameterType1.setName("echo_output");
        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);
        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        /*
           * Save to registry
           */

        airavataAPI.getApplicationManager().getApplicationDescriptors(serv.getType().getName());

        if(airavataAPI.getApplicationManager().isHostDescriptorExists(host.getType().getHostName())) {
            airavataAPI.getApplicationManager().updateHostDescriptor(host);
        } else {
            airavataAPI.getApplicationManager().saveHostDescription(host);
        }

        if (airavataAPI.getApplicationManager().isApplicationDescriptorExists(serv.getType().getName(), host.getType().getHostName(), appDesc.getType().getApplicationName().getStringValue())){
            airavataAPI.getApplicationManager().updateApplicationDescriptor(serv.getType().getName(), host.getType().getHostName(), appDesc);
        } else {
            airavataAPI.getApplicationManager().saveApplicationDescription(serv.getType().getName(), host.getType().getHostName(), appDesc);
        }

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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

    }


    public void testRemoveApplicationDescriptor() throws Exception {
        ApplicationDescription applicationDescription = new ApplicationDescription(ApplicationDeploymentDescriptionType.type);
        ApplicationDeploymentDescriptionType.ApplicationName applicationName = applicationDescription.getType().addNewApplicationName();
        applicationName.setStringValue("testApplication");
        applicationDescription.getType().setApplicationName(applicationName);
        applicationDescription.getType().setInputDataDirectory("/bin");
        applicationDescription.getType().setExecutableLocation("/bin/echo");
        applicationDescription.getType().setOutputDataDirectory("/tmp");

        registry.addApplicationDescriptor("testService", "testHost", applicationDescription);
        registry.removeApplicationDescriptor("testService", "testHost", "testApplication");

        assertFalse("application descriptor removed successfully", registry.isApplicationDescriptorExists("testService", "testHost", "testApplication"));
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        host.getType().setHostAddress(properties.getProperty("host.fqdn.name"));
        ((GlobusHostType) host.getType()).setGridFTPEndPointArray(new String[]{properties.getProperty("gridftp.endpoint")});
        ((GlobusHostType) host.getType()).setGlobusGateKeeperEndPointArray(new String[]{properties.getProperty("gram.endpoints")});

        /* Application */
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setNodeCount(1);
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue("MockPwscfMPI");
        app.setExecutableLocation("/share/home/01437/ogce/airavata-test/applications/MockPwscf/pwscf.w");
        app.setScratchWorkingDirectory(properties.getProperty("scratch.working.directory"));
        app.setStaticWorkingDirectory("/share/home/01437/ogce/airavata-test/applications/MockPwscf");
        app.setCpuCount(4);
        app.setJobType(JobTypeType.MPI);
        app.setMaxWallTime(9);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(properties.getProperty("allocation.charge.number"));

        /* Service */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("MockPwscfMPIService");
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription


        /*
        * Application deployment description
        */
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(1);
        app.setNodeCount(1);
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue("FileBreed");
        app.setExecutableLocation("/bin/echo");
        app.setScratchWorkingDirectory(properties.getProperty("scratch.working.directory"));
        app.setCpuCount(1);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(properties.getProperty("allocation.charge.number"));
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(properties.getProperty("defualt.queue"));
       
        /*
 
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

    }

    public static ApplicationDescription registerApplication(String appName, String exeuctableLocation, String scratchWorkingDirectory, String hostName,
                                                                       String projAccNumber, String queueName, String cpuCount, String nodeCount, String maxMemory) throws Exception {
        // Create Application Description
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(Integer.parseInt(cpuCount));
        app.setNodeCount(Integer.parseInt(nodeCount));
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue(appName);
        app.setExecutableLocation(exeuctableLocation);
        app.setScratchWorkingDirectory(scratchWorkingDirectory);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(projAccNumber);
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(queueName);
        app.setMaxMemory(Integer.parseInt(maxMemory));
        return appDesc;
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        serviceDescriptor.setOutputParams(outputParams);
        return serviceDescriptor;
    }

    public static ApplicationDescription createApplicationDescription(ApplicationDescriptor applicationDescriptor){
        ApplicationDescription applicationDescription = new ApplicationDescription();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue(applicationDescriptor.getName());
        applicationDescription.getType().setApplicationName(name);
        applicationDescription.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
        applicationDescription.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

        if (applicationDescriptor.getInputDir() != null){
            applicationDescription.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
        }
        if (applicationDescriptor.getOutputDir() != null){
            applicationDescription.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
        }
        if (applicationDescriptor.getStdIn() != null){
            applicationDescription.getType().setStandardInput(applicationDescriptor.getStdIn());
        }
        if (applicationDescriptor.getStdOut() != null){
            applicationDescription.getType().setStandardOutput(applicationDescriptor.getStdOut());
        }
        if (applicationDescriptor.getStdError() != null){
            applicationDescription.getType().setStandardError(applicationDescriptor.getStdError());
        }
        if (applicationDescriptor.getStaticWorkigDir() != null){
            applicationDescription.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
        }
        HashMap<String,String> environmentVariables = applicationDescriptor.getEnvironmentVariables();
        if (environmentVariables != null && !environmentVariables.isEmpty()){
            NameValuePairType[] appEnviVariablesArray = new NameValuePairType[environmentVariables.size()];
            for(String key : environmentVariables.keySet()) {
                int i = 0;
                NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                nameValuePairType.setName(key);
                nameValuePairType.setValue(environmentVariables.get(key));
                appEnviVariablesArray[i] = nameValuePairType;
                i++;
            }
            applicationDescription.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
        }

        //set advanced options according app desc type
        if(applicationDescriptor.getApplicationDescType() != null && !applicationDescriptor.getApplicationDescType().isEmpty()){
            if (applicationDescriptor.getApplicationDescType().equals(ApplicationDescriptorTypes.HPC_APP_DEP_DESC_TYPE)){
                ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
                appDesc.getType().setApplicationName(name);
                appDesc.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
                appDesc.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

                if (applicationDescriptor.getInputDir() != null){
                    appDesc.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
                }
                if (applicationDescriptor.getOutputDir() != null){
                    appDesc.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
                }
                if (applicationDescriptor.getStdIn() != null){
                    appDesc.getType().setStandardInput(applicationDescriptor.getStdIn());
                }
                if (applicationDescriptor.getStdOut() != null){
                    appDesc.getType().setStandardOutput(applicationDescriptor.getStdOut());
                }
                if (applicationDescriptor.getStdError() != null){
                    appDesc.getType().setStandardError(applicationDescriptor.getStdError());
                }
                if (applicationDescriptor.getStaticWorkigDir() != null){
                    appDesc.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
                }
                HashMap<String,String> envVariables = applicationDescriptor.getEnvironmentVariables();
                if (envVariables != null && !envVariables.isEmpty()){
                    NameValuePairType[] appEnviVariablesArray = new NameValuePairType[envVariables.size()];
                    for(String key : envVariables.keySet()) {
                        int i = 0;
                        NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                        nameValuePairType.setName(key);
                        nameValuePairType.setValue(envVariables.get(key));
                        appEnviVariablesArray[i] = nameValuePairType;
                        i++;
                    }
                    appDesc.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
                }

                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();

                ProjectAccountType projectAccountType = app.addNewProjectAccount();
                if (applicationDescriptor.getProjectNumber() != null){
                    projectAccountType.setProjectAccountNumber(applicationDescriptor.getProjectNumber());
                }
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

                    + " does not found on resource Catalog " + registryService);

        /*
         * Load app
         */
        ApplicationDescription app = null;
        try {
            app = registryService.getApplicationManager().getApplicationDescription(context.getServiceName(),
                    getRegisteredHost(registryService, context.getServiceName()).getType().getHostName());
        } catch (AiravataAPIInvocationException e2) {
            e2.printStackTrace();
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