Examples of ApplicationDescription


Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

    }

    public static ApplicationDescription registerApplication(String appName, String exeuctableLocation, String scratchWorkingDirectory, String hostName,
                                                                       String projAccNumber, String queueName, String cpuCount, String nodeCount, String maxMemory) throws Exception {
        // Create Application Description
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(Integer.parseInt(cpuCount));
        app.setNodeCount(Integer.parseInt(nodeCount));
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue(appName);
        app.setExecutableLocation(exeuctableLocation);
        app.setScratchWorkingDirectory(scratchWorkingDirectory);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(projAccNumber);
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(queueName);
        app.setMaxMemory(Integer.parseInt(maxMemory));
        return appDesc;
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        serviceDescriptor.setOutputParams(outputParams);
        return serviceDescriptor;
    }

    public static ApplicationDescription createApplicationDescription(ApplicationDescriptor applicationDescriptor){
        ApplicationDescription applicationDescription = new ApplicationDescription();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue(applicationDescriptor.getName());
        applicationDescription.getType().setApplicationName(name);
        applicationDescription.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
        applicationDescription.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

        if (applicationDescriptor.getInputDir() != null){
            applicationDescription.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
        }
        if (applicationDescriptor.getOutputDir() != null){
            applicationDescription.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
        }
        if (applicationDescriptor.getStdIn() != null){
            applicationDescription.getType().setStandardInput(applicationDescriptor.getStdIn());
        }
        if (applicationDescriptor.getStdOut() != null){
            applicationDescription.getType().setStandardOutput(applicationDescriptor.getStdOut());
        }
        if (applicationDescriptor.getStdError() != null){
            applicationDescription.getType().setStandardError(applicationDescriptor.getStdError());
        }
        if (applicationDescriptor.getStaticWorkigDir() != null){
            applicationDescription.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
        }
        HashMap<String,String> environmentVariables = applicationDescriptor.getEnvironmentVariables();
        if (environmentVariables != null && !environmentVariables.isEmpty()){
            NameValuePairType[] appEnviVariablesArray = new NameValuePairType[environmentVariables.size()];
            for(String key : environmentVariables.keySet()) {
                int i = 0;
                NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                nameValuePairType.setName(key);
                nameValuePairType.setValue(environmentVariables.get(key));
                appEnviVariablesArray[i] = nameValuePairType;
                i++;
            }
            applicationDescription.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
        }

        //set advanced options according app desc type
        if(applicationDescriptor.getApplicationDescType() != null && !applicationDescriptor.getApplicationDescType().isEmpty()){
            if (applicationDescriptor.getApplicationDescType().equals(ApplicationDescriptorTypes.HPC_APP_DEP_DESC_TYPE)){
                ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
                appDesc.getType().setApplicationName(name);
                appDesc.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
                appDesc.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

                if (applicationDescriptor.getInputDir() != null){
                    appDesc.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
                }
                if (applicationDescriptor.getOutputDir() != null){
                    appDesc.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
                }
                if (applicationDescriptor.getStdIn() != null){
                    appDesc.getType().setStandardInput(applicationDescriptor.getStdIn());
                }
                if (applicationDescriptor.getStdOut() != null){
                    appDesc.getType().setStandardOutput(applicationDescriptor.getStdOut());
                }
                if (applicationDescriptor.getStdError() != null){
                    appDesc.getType().setStandardError(applicationDescriptor.getStdError());
                }
                if (applicationDescriptor.getStaticWorkigDir() != null){
                    appDesc.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
                }
                HashMap<String,String> envVariables = applicationDescriptor.getEnvironmentVariables();
                if (envVariables != null && !envVariables.isEmpty()){
                    NameValuePairType[] appEnviVariablesArray = new NameValuePairType[envVariables.size()];
                    for(String key : envVariables.keySet()) {
                        int i = 0;
                        NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                        nameValuePairType.setName(key);
                        nameValuePairType.setValue(envVariables.get(key));
                        appEnviVariablesArray[i] = nameValuePairType;
                        i++;
                    }
                    appDesc.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
                }

                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();

                ProjectAccountType projectAccountType = app.addNewProjectAccount();
                if (applicationDescriptor.getProjectNumber() != null){
                    projectAccountType.setProjectAccountNumber(applicationDescriptor.getProjectNumber());
                }
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        airavataAPI.getApplicationManager().addServiceDescription(serviceDescription);
        Assert.assertTrue(airavataAPI.getApplicationManager().isServiceDescriptorExists(
                serviceDescription.getType().getName()));

        // Deployment descriptor
        ApplicationDescription applicationDeploymentDescription = descriptorBuilder
                .buildApplicationDeploymentDescription("EchoApplication", "/bin/echo", "/tmp");

        log("Adding deployment description ...");
        airavataAPI.getApplicationManager().addApplicationDescription(serviceDescription, hostDescription,
                applicationDeploymentDescription);

        Assert.assertTrue(airavataAPI.getApplicationManager().isApplicationDescriptorExists(
                serviceDescription.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription.getType().getApplicationName().getStringValue()));

        log("Saving workflow ...");
        Workflow workflow = new Workflow(getWorkflowComposeContent("src/test/resources/EchoWorkflow.xwf"));
        airavataAPI.getWorkflowManager().addWorkflow(workflow);
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

public class AppDescriptorCheckHandler implements GFacHandler {
    private static final Logger logger = LoggerFactory.getLogger(AppDescriptorCheckHandler.class);

    public void invoke(JobExecutionContext jobExecutionContext) throws GFacHandlerException {
        logger.info("Invoking ApplicationDescriptorCheckHandler ...");
        ApplicationDescription app = jobExecutionContext.getApplicationContext().getApplicationDeploymentDescription();
        ApplicationDeploymentDescriptionType appDesc = app.getType();
        if (appDesc.getScratchWorkingDirectory() == null) {
            appDesc.setScratchWorkingDirectory("/tmp");
        }

        /*
 
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

    applicationContext.setServiceDescription(getServiceDesc());
    return applicationContext;
  }

  protected ApplicationDescription getApplicationDesc(JobTypeType jobType) {
    ApplicationDescription appDesc = new ApplicationDescription(
        HpcApplicationDeploymentType.type);
    HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc
        .getType();
    ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory
        .newInstance();
    name.setStringValue("EchoLocal");
    app.setApplicationName(name);
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

          if (serviceDescriptionDialog.isServiceCreated()) {
          loadDescriptors();
        }
          break;
        case APPLICATION:
                ApplicationDescription a = (ApplicationDescription) getSelected();
                String[] s = dlist.get(a).split("\\$");
                ApplicationDescriptionDialog aDescriptionDialog = new ApplicationDescriptionDialog(engine, false, a, s[1], s[0]);
                aDescriptionDialog.setLocationRelativeTo(this.engine.getGUI().getFrame());
                aDescriptionDialog.open();
                if (aDescriptionDialog.isApplicationDescCreated()) {
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

          title = "Service description";
          question = "Are you sure that you want to remove the applications associated with \""
                      + d.getType().getName() + "\"?";
          break;
        case APPLICATION:
          ApplicationDescription a = (ApplicationDescription) getSelected();
          title = "Service description";
          question = "Are you sure that you want to remove the service description \""
                      + a.getType().getApplicationName().getStringValue() + "\"?";
          break;
      }
     
       
    if (askQuestion(title, question)) {
              switch (descriptorType){
              case HOST:
                HostDescription h = (HostDescription) getSelected();
                  getAPI().getApplicationManager().deleteHostDescription(h.getType().getHostName());
                        loadDescriptors();
                break;
              case SERVICE:
                  ServiceDescription d = (ServiceDescription) getSelected();
                  getAPI().getApplicationManager().deleteServiceDescription(d.getType().getName());
                        loadDescriptors();
                break;
              case APPLICATION:
                ApplicationDescription a = (ApplicationDescription) getSelected();
                String[] s = dlist.get(a).split("\\$");
                  getAPI().getApplicationManager().deleteApplicationDescription(s[0], s[1], a.getType().getApplicationName().getStringValue());
                loadDescriptors();
                        break;
              }
//        loadDescriptors();
        }
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

        log.info("Saving service description ...");
        // Saving service descriptor
        airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);

        // Deployment descriptor creation
        ApplicationDescription applicationDeploymentDescription = new ApplicationDescription();
        ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType = applicationDeploymentDescription
                .getType();
        applicationDeploymentDescriptionType.addNewApplicationName().setStringValue("EchoApplication");
        applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
        applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

                if (isNewDescritor()) {
          String baseName = "Application";
          int i = 1;
          String defaultName = baseName + i;
          try {
            ApplicationDescription applicationDescription = getRegistry()
                .getApplicationManager().getApplicationDescription(getServiceName(),
                                        getHostName());
            while (true) {
              boolean notFound = true;
              if (applicationDescription.getType()
                  .getApplicationName().getStringValue()
                  .equals(defaultName)) {
                notFound = false;
                break;
              }
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Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

    }

    public ApplicationDescription getShellApplicationDescription() {
        if(shellApplicationDescription == null){
            if (isNewDescritor()) {
        shellApplicationDescription = new ApplicationDescription();
      }else{
        try {
          shellApplicationDescription= ApplicationDescription.fromXML(getOriginalDescription().toXML());
        } catch (XmlException e) {
          //shouldn't happen (hopefully)
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