Package org.apache.commons.math3.ode.nonstiff

Source Code of org.apache.commons.math3.ode.nonstiff.AdamsBashforthIntegrator

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* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements.  See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License.  You may obtain a copy of the License at
*
*      http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
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package org.apache.commons.math3.ode.nonstiff;

import org.apache.commons.math3.exception.DimensionMismatchException;
import org.apache.commons.math3.exception.MaxCountExceededException;
import org.apache.commons.math3.exception.NoBracketingException;
import org.apache.commons.math3.exception.NumberIsTooSmallException;
import org.apache.commons.math3.linear.Array2DRowRealMatrix;
import org.apache.commons.math3.ode.EquationsMapper;
import org.apache.commons.math3.ode.ExpandableStatefulODE;
import org.apache.commons.math3.ode.sampling.NordsieckStepInterpolator;
import org.apache.commons.math3.util.FastMath;


/**
* This class implements explicit Adams-Bashforth integrators for Ordinary
* Differential Equations.
*
* <p>Adams-Bashforth methods (in fact due to Adams alone) are explicit
* multistep ODE solvers. This implementation is a variation of the classical
* one: it uses adaptive stepsize to implement error control, whereas
* classical implementations are fixed step size. The value of state vector
* at step n+1 is a simple combination of the value at step n and of the
* derivatives at steps n, n-1, n-2 ... Depending on the number k of previous
* steps one wants to use for computing the next value, different formulas
* are available:</p>
* <ul>
*   <li>k = 1: y<sub>n+1</sub> = y<sub>n</sub> + h y'<sub>n</sub></li>
*   <li>k = 2: y<sub>n+1</sub> = y<sub>n</sub> + h (3y'<sub>n</sub>-y'<sub>n-1</sub>)/2</li>
*   <li>k = 3: y<sub>n+1</sub> = y<sub>n</sub> + h (23y'<sub>n</sub>-16y'<sub>n-1</sub>+5y'<sub>n-2</sub>)/12</li>
*   <li>k = 4: y<sub>n+1</sub> = y<sub>n</sub> + h (55y'<sub>n</sub>-59y'<sub>n-1</sub>+37y'<sub>n-2</sub>-9y'<sub>n-3</sub>)/24</li>
*   <li>...</li>
* </ul>
*
* <p>A k-steps Adams-Bashforth method is of order k.</p>
*
* <h3>Implementation details</h3>
*
* <p>We define scaled derivatives s<sub>i</sub>(n) at step n as:
* <pre>
* s<sub>1</sub>(n) = h y'<sub>n</sub> for first derivative
* s<sub>2</sub>(n) = h<sup>2</sup>/2 y''<sub>n</sub> for second derivative
* s<sub>3</sub>(n) = h<sup>3</sup>/6 y'''<sub>n</sub> for third derivative
* ...
* s<sub>k</sub>(n) = h<sup>k</sup>/k! y<sup>(k)</sup><sub>n</sub> for k<sup>th</sup> derivative
* </pre></p>
*
* <p>The definitions above use the classical representation with several previous first
* derivatives. Lets define
* <pre>
*   q<sub>n</sub> = [ s<sub>1</sub>(n-1) s<sub>1</sub>(n-2) ... s<sub>1</sub>(n-(k-1)) ]<sup>T</sup>
* </pre>
* (we omit the k index in the notation for clarity). With these definitions,
* Adams-Bashforth methods can be written:
* <ul>
*   <li>k = 1: y<sub>n+1</sub> = y<sub>n</sub> + s<sub>1</sub>(n)</li>
*   <li>k = 2: y<sub>n+1</sub> = y<sub>n</sub> + 3/2 s<sub>1</sub>(n) + [ -1/2 ] q<sub>n</sub></li>
*   <li>k = 3: y<sub>n+1</sub> = y<sub>n</sub> + 23/12 s<sub>1</sub>(n) + [ -16/12 5/12 ] q<sub>n</sub></li>
*   <li>k = 4: y<sub>n+1</sub> = y<sub>n</sub> + 55/24 s<sub>1</sub>(n) + [ -59/24 37/24 -9/24 ] q<sub>n</sub></li>
*   <li>...</li>
* </ul></p>
*
* <p>Instead of using the classical representation with first derivatives only (y<sub>n</sub>,
* s<sub>1</sub>(n) and q<sub>n</sub>), our implementation uses the Nordsieck vector with
* higher degrees scaled derivatives all taken at the same step (y<sub>n</sub>, s<sub>1</sub>(n)
* and r<sub>n</sub>) where r<sub>n</sub> is defined as:
* <pre>
* r<sub>n</sub> = [ s<sub>2</sub>(n), s<sub>3</sub>(n) ... s<sub>k</sub>(n) ]<sup>T</sup>
* </pre>
* (here again we omit the k index in the notation for clarity)
* </p>
*
* <p>Taylor series formulas show that for any index offset i, s<sub>1</sub>(n-i) can be
* computed from s<sub>1</sub>(n), s<sub>2</sub>(n) ... s<sub>k</sub>(n), the formula being exact
* for degree k polynomials.
* <pre>
* s<sub>1</sub>(n-i) = s<sub>1</sub>(n) + &sum;<sub>j</sub> j (-i)<sup>j-1</sup> s<sub>j</sub>(n)
* </pre>
* The previous formula can be used with several values for i to compute the transform between
* classical representation and Nordsieck vector. The transform between r<sub>n</sub>
* and q<sub>n</sub> resulting from the Taylor series formulas above is:
* <pre>
* q<sub>n</sub> = s<sub>1</sub>(n) u + P r<sub>n</sub>
* </pre>
* where u is the [ 1 1 ... 1 ]<sup>T</sup> vector and P is the (k-1)&times;(k-1) matrix built
* with the j (-i)<sup>j-1</sup> terms:
* <pre>
*        [  -2   3   -4    5  ... ]
*        [  -4  12  -32   80  ... ]
*   P =  [  -6  27 -108  405  ... ]
*        [  -8  48 -256 1280  ... ]
*        [          ...           ]
* </pre></p>
*
* <p>Using the Nordsieck vector has several advantages:
* <ul>
*   <li>it greatly simplifies step interpolation as the interpolator mainly applies
*   Taylor series formulas,</li>
*   <li>it simplifies step changes that occur when discrete events that truncate
*   the step are triggered,</li>
*   <li>it allows to extend the methods in order to support adaptive stepsize.</li>
* </ul></p>
*
* <p>The Nordsieck vector at step n+1 is computed from the Nordsieck vector at step n as follows:
* <ul>
*   <li>y<sub>n+1</sub> = y<sub>n</sub> + s<sub>1</sub>(n) + u<sup>T</sup> r<sub>n</sub></li>
*   <li>s<sub>1</sub>(n+1) = h f(t<sub>n+1</sub>, y<sub>n+1</sub>)</li>
*   <li>r<sub>n+1</sub> = (s<sub>1</sub>(n) - s<sub>1</sub>(n+1)) P<sup>-1</sup> u + P<sup>-1</sup> A P r<sub>n</sub></li>
* </ul>
* where A is a rows shifting matrix (the lower left part is an identity matrix):
* <pre>
*        [ 0 0   ...  0 0 | 0 ]
*        [ ---------------+---]
*        [ 1 0   ...  0 0 | 0 ]
*    A = [ 0 1   ...  0 0 | 0 ]
*        [       ...      | 0 ]
*        [ 0 0   ...  1 0 | 0 ]
*        [ 0 0   ...  0 1 | 0 ]
* </pre></p>
*
* <p>The P<sup>-1</sup>u vector and the P<sup>-1</sup> A P matrix do not depend on the state,
* they only depend on k and therefore are precomputed once for all.</p>
*
* @since 2.0
*/
public class AdamsBashforthIntegrator extends AdamsIntegrator {

    /** Integrator method name. */
    private static final String METHOD_NAME = "Adams-Bashforth";

    /**
     * Build an Adams-Bashforth integrator with the given order and step control parameters.
     * @param nSteps number of steps of the method excluding the one being computed
     * @param minStep minimal step (sign is irrelevant, regardless of
     * integration direction, forward or backward), the last step can
     * be smaller than this
     * @param maxStep maximal step (sign is irrelevant, regardless of
     * integration direction, forward or backward), the last step can
     * be smaller than this
     * @param scalAbsoluteTolerance allowed absolute error
     * @param scalRelativeTolerance allowed relative error
     * @exception NumberIsTooSmallException if order is 1 or less
     */
    public AdamsBashforthIntegrator(final int nSteps,
                                    final double minStep, final double maxStep,
                                    final double scalAbsoluteTolerance,
                                    final double scalRelativeTolerance)
        throws NumberIsTooSmallException {
        super(METHOD_NAME, nSteps, nSteps, minStep, maxStep,
              scalAbsoluteTolerance, scalRelativeTolerance);
    }

    /**
     * Build an Adams-Bashforth integrator with the given order and step control parameters.
     * @param nSteps number of steps of the method excluding the one being computed
     * @param minStep minimal step (sign is irrelevant, regardless of
     * integration direction, forward or backward), the last step can
     * be smaller than this
     * @param maxStep maximal step (sign is irrelevant, regardless of
     * integration direction, forward or backward), the last step can
     * be smaller than this
     * @param vecAbsoluteTolerance allowed absolute error
     * @param vecRelativeTolerance allowed relative error
     * @exception IllegalArgumentException if order is 1 or less
     */
    public AdamsBashforthIntegrator(final int nSteps,
                                    final double minStep, final double maxStep,
                                    final double[] vecAbsoluteTolerance,
                                    final double[] vecRelativeTolerance)
        throws IllegalArgumentException {
        super(METHOD_NAME, nSteps, nSteps, minStep, maxStep,
              vecAbsoluteTolerance, vecRelativeTolerance);
    }

    /** {@inheritDoc} */
    @Override
    public void integrate(final ExpandableStatefulODE equations, final double t)
        throws NumberIsTooSmallException, DimensionMismatchException,
               MaxCountExceededException, NoBracketingException {

        sanityChecks(equations, t);
        setEquations(equations);
        final boolean forward = t > equations.getTime();

        // initialize working arrays
        final double[] y0   = equations.getCompleteState();
        final double[] y    = y0.clone();
        final double[] yDot = new double[y.length];

        // set up an interpolator sharing the integrator arrays
        final NordsieckStepInterpolator interpolator = new NordsieckStepInterpolator();
        interpolator.reinitialize(y, forward,
                                  equations.getPrimaryMapper(), equations.getSecondaryMappers());

        // set up integration control objects
        initIntegration(equations.getTime(), y0, t);

        // compute the initial Nordsieck vector using the configured starter integrator
        start(equations.getTime(), y, t);
        interpolator.reinitialize(stepStart, stepSize, scaled, nordsieck);
        interpolator.storeTime(stepStart);
        final int lastRow = nordsieck.getRowDimension() - 1;

        // reuse the step that was chosen by the starter integrator
        double hNew = stepSize;
        interpolator.rescale(hNew);

        // main integration loop
        isLastStep = false;
        do {

            double error = 10;
            while (error >= 1.0) {

                stepSize = hNew;

                // evaluate error using the last term of the Taylor expansion
                error = 0;
                for (int i = 0; i < mainSetDimension; ++i) {
                    final double yScale = FastMath.abs(y[i]);
                    final double tol = (vecAbsoluteTolerance == null) ?
                                       (scalAbsoluteTolerance + scalRelativeTolerance * yScale) :
                                       (vecAbsoluteTolerance[i] + vecRelativeTolerance[i] * yScale);
                    final double ratio  = nordsieck.getEntry(lastRow, i) / tol;
                    error += ratio * ratio;
                }
                error = FastMath.sqrt(error / mainSetDimension);

                if (error >= 1.0) {
                    // reject the step and attempt to reduce error by stepsize control
                    final double factor = computeStepGrowShrinkFactor(error);
                    hNew = filterStep(stepSize * factor, forward, false);
                    interpolator.rescale(hNew);

                }
            }

            // predict a first estimate of the state at step end
            final double stepEnd = stepStart + stepSize;
            interpolator.shift();
            interpolator.setInterpolatedTime(stepEnd);
            final ExpandableStatefulODE expandable = getExpandable();
            final EquationsMapper primary = expandable.getPrimaryMapper();
            primary.insertEquationData(interpolator.getInterpolatedState(), y);
            int index = 0;
            for (final EquationsMapper secondary : expandable.getSecondaryMappers()) {
                secondary.insertEquationData(interpolator.getInterpolatedSecondaryState(index), y);
                ++index;
            }

            // evaluate the derivative
            computeDerivatives(stepEnd, y, yDot);

            // update Nordsieck vector
            final double[] predictedScaled = new double[y0.length];
            for (int j = 0; j < y0.length; ++j) {
                predictedScaled[j] = stepSize * yDot[j];
            }
            final Array2DRowRealMatrix nordsieckTmp = updateHighOrderDerivativesPhase1(nordsieck);
            updateHighOrderDerivativesPhase2(scaled, predictedScaled, nordsieckTmp);
            interpolator.reinitialize(stepEnd, stepSize, predictedScaled, nordsieckTmp);

            // discrete events handling
            interpolator.storeTime(stepEnd);
            stepStart = acceptStep(interpolator, y, yDot, t);
            scaled    = predictedScaled;
            nordsieck = nordsieckTmp;
            interpolator.reinitialize(stepEnd, stepSize, scaled, nordsieck);

            if (!isLastStep) {

                // prepare next step
                interpolator.storeTime(stepStart);

                if (resetOccurred) {
                    // some events handler has triggered changes that
                    // invalidate the derivatives, we need to restart from scratch
                    start(stepStart, y, t);
                    interpolator.reinitialize(stepStart, stepSize, scaled, nordsieck);
                }

                // stepsize control for next step
                final double  factor     = computeStepGrowShrinkFactor(error);
                final double  scaledH    = stepSize * factor;
                final double  nextT      = stepStart + scaledH;
                final boolean nextIsLast = forward ? (nextT >= t) : (nextT <= t);
                hNew = filterStep(scaledH, forward, nextIsLast);

                final double  filteredNextT      = stepStart + hNew;
                final boolean filteredNextIsLast = forward ? (filteredNextT >= t) : (filteredNextT <= t);
                if (filteredNextIsLast) {
                    hNew = t - stepStart;
                }

                interpolator.rescale(hNew);

            }

        } while (!isLastStep);

        // dispatch results
        equations.setTime(stepStart);
        equations.setCompleteState(y);

        resetInternalState();

    }

}
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