Classes and Subpackages of picard.analysis

picard.analysis.AlignmentSummaryMetrics
picard.analysis.AlignmentSummaryMetricsCollector
picard.analysis.AlignmentSummaryMetricsCollector$GroupAlignmentSummaryMetricsPerUnitMetricCollector
picard.analysis.AlignmentSummaryMetricsCollector$GroupAlignmentSummaryMetricsPerUnitMetricCollector$IndividualAlignmentSummaryMetricsCollector
picard.analysis.BaseDistributionByCycleMetrics
picard.analysis.CollectAlignmentSummaryMetrics
picard.analysis.CollectAlignmentSummaryMetricsTest
picard.analysis.CollectBaseDistributionByCycle
picard.analysis.CollectBaseDistributionByCycle$HistogramGenerator
picard.analysis.CollectGcBiasMetrics
picard.analysis.CollectGcBiasMetrics$CalculateGcState
picard.analysis.CollectInsertSizeMetrics
picard.analysis.CollectInsertSizeMetricsTest
picard.analysis.CollectJumpingLibraryMetrics
picard.analysis.CollectMultipleMetrics
picard.analysis.CollectMultipleMetrics$ProgramInterface
picard.analysis.CollectOxoGMetrics
picard.analysis.CollectOxoGMetrics$Calculator
picard.analysis.CollectOxoGMetrics$Counts
picard.analysis.CollectOxoGMetrics$CpcgMetrics
picard.analysis.CollectOxoGMetrics$InsertSizeFilter
picard.analysis.CollectQualityYieldMetrics
picard.analysis.CollectQualityYieldMetrics$QualityYieldMetrics
picard.analysis.CollectRnaSeqMetrics
picard.analysis.CollectRnaSeqMetricsTest
picard.analysis.CollectRrbsMetrics
picard.analysis.CollectWgsMetrics
picard.analysis.CollectWgsMetrics$WgsMetrics
picard.analysis.CountingDuplicateFilter
picard.analysis.CountingFilter
picard.analysis.CountingMapQFilter
picard.analysis.CountingPairedFilter
picard.analysis.CpgLocation
picard.analysis.GcBiasDetailMetrics
picard.analysis.GcBiasSummaryMetrics
picard.analysis.InsertSizeMetrics
picard.analysis.JumpingLibraryMetrics
picard.analysis.MeanQualityByCycle
picard.analysis.MeanQualityByCycle$HistogramGenerator
picard.analysis.MultiLevelCollectorTest
picard.analysis.MultiLevelCollectorTest$RecordCountMultiLevelCollector
picard.analysis.MultiLevelCollectorTest$RecordCountMultiLevelCollector$RecordCountPerUnitCollector
picard.analysis.MultiLevelCollectorTest$TestArg
picard.analysis.MultiLevelCollectorTest$TotalNumberMetric
picard.analysis.QualityScoreDistribution
picard.analysis.RnaSeqMetrics
picard.analysis.RrbsCpgDetailMetrics
picard.analysis.RrbsMetrics
picard.analysis.RrbsMetricsCollector
picard.analysis.RrbsMetricsCollector$PerUnitRrbsMetricsCollector
picard.analysis.RrbsSummaryMetrics
picard.analysis.SinglePassSamProgram

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Subpackages of picard.analysis

All Classes in picard.analysis