Package picard.analysis

Examples of picard.analysis.InsertSizeMetrics


                final Histogram<Integer> Histogram = entry.getValue();
                final double total = Histogram.getCount();

                // Only include a category if it has a sufficient percentage of the data in it
                if( total > totalInserts * minimumPct ) {
                    final InsertSizeMetrics metrics = new InsertSizeMetrics();
                    metrics.SAMPLE             = this.sample;
                    metrics.LIBRARY            = this.library;
                    metrics.READ_GROUP         = this.readGroup;
                    metrics.PAIR_ORIENTATION   = pairOrientation;
                    metrics.READ_PAIRS         = (long) total;
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