Classes and Subpackages of org.broadinstitute.gatk.utils.pairhmm

org.broadinstitute.gatk.utils.pairhmm.ActiveRegionTestDataSet
org.broadinstitute.gatk.utils.pairhmm.ActiveRegionTestDataSet$MyGATKSAMRecord
org.broadinstitute.gatk.utils.pairhmm.ArrayLoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.BatchPairHMM
org.broadinstitute.gatk.utils.pairhmm.CnyPairHMM
org.broadinstitute.gatk.utils.pairhmm.CnyPairHMM$HmmInput
org.broadinstitute.gatk.utils.pairhmm.CnyPairHMM$ResultQueue
org.broadinstitute.gatk.utils.pairhmm.CnyPairHMMUnitTest
org.broadinstitute.gatk.utils.pairhmm.DebugJNILoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.FastLoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.FastLoglessPairHMM$Problem
org.broadinstitute.gatk.utils.pairhmm.FastLoglessPairHMMUnitTest
org.broadinstitute.gatk.utils.pairhmm.FlexibleHMM
org.broadinstitute.gatk.utils.pairhmm.JNILoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.Log10PairHMM
org.broadinstitute.gatk.utils.pairhmm.LoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.N2MemoryPairHMM
org.broadinstitute.gatk.utils.pairhmm.PairHMM
org.broadinstitute.gatk.utils.pairhmm.PairHMMEmpiricalBenchmark
org.broadinstitute.gatk.utils.pairhmm.PairHMMModel
org.broadinstitute.gatk.utils.pairhmm.PairHMMModelUnitTest
org.broadinstitute.gatk.utils.pairhmm.PairHMMProbabilityBugIntegrationTest
org.broadinstitute.gatk.utils.pairhmm.PairHMMReadyHaplotypes
org.broadinstitute.gatk.utils.pairhmm.PairHMMReadyHaplotypes$Entry
org.broadinstitute.gatk.utils.pairhmm.PairHMMReadyHaplotypes$Iterator
org.broadinstitute.gatk.utils.pairhmm.PairHMMSyntheticBenchmark
org.broadinstitute.gatk.utils.pairhmm.PairHMMTestData
org.broadinstitute.gatk.utils.pairhmm.PairHMMUnitTest
org.broadinstitute.gatk.utils.pairhmm.PairHMMUnitTest$BasicLikelihoodTestProvider
org.broadinstitute.gatk.utils.pairhmm.VectorLoglessPairHMM
org.broadinstitute.gatk.utils.pairhmm.VectorLoglessPairHMM$JNIHaplotypeDataHolderClass
org.broadinstitute.gatk.utils.pairhmm.VectorLoglessPairHMM$JNIReadDataHolderClass

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All Classes in org.broadinstitute.gatk.utils.pairhmm