Package org.broadinstitute.gatk.utils.pairhmm

Examples of org.broadinstitute.gatk.utils.pairhmm.Log10PairHMM

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    public PairHMMIndelErrorModel(byte indelGOP, byte indelGCP, boolean deb, final PairHMM.HMM_IMPLEMENTATION hmmType ) {
        this.DEBUG = deb;

        switch (hmmType) {
            case EXACT:
                pairHMM = new Log10PairHMM(true);
                break;
            case ORIGINAL:
                pairHMM = new Log10PairHMM(false);
                break;
            case LOGLESS_CACHING:
                pairHMM = new LoglessPairHMM();
                break;
            case ARRAY_LOGLESS:
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Related Classes of org.broadinstitute.gatk.utils.pairhmm.Log10PairHMM

  • org.broadinstitute.gatk.tools.walkers.indels.PairHMMIndelErrorModel
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