Classes and Subpackages of org.broadinstitute.gatk.utils.exceptions

org.broadinstitute.gatk.utils.exceptions.DynamicClassResolutionException
org.broadinstitute.gatk.utils.exceptions.GATKException
org.broadinstitute.gatk.utils.exceptions.ReviewedGATKException
org.broadinstitute.gatk.utils.exceptions.UserException
org.broadinstitute.gatk.utils.exceptions.UserException$BadArgumentValue
org.broadinstitute.gatk.utils.exceptions.UserException$BadInput
org.broadinstitute.gatk.utils.exceptions.UserException$BadTmpDir
org.broadinstitute.gatk.utils.exceptions.UserException$CannotExecuteQScript
org.broadinstitute.gatk.utils.exceptions.UserException$CannotExecuteRScript
org.broadinstitute.gatk.utils.exceptions.UserException$CannotHandleGzippedRef
org.broadinstitute.gatk.utils.exceptions.UserException$CommandLineException
org.broadinstitute.gatk.utils.exceptions.UserException$CouldNotCreateOutputFile
org.broadinstitute.gatk.utils.exceptions.UserException$CouldNotReadInputFile
org.broadinstitute.gatk.utils.exceptions.UserException$DeprecatedAnnotation
org.broadinstitute.gatk.utils.exceptions.UserException$DeprecatedArgument
org.broadinstitute.gatk.utils.exceptions.UserException$DeprecatedWalker
org.broadinstitute.gatk.utils.exceptions.UserException$ErrorWritingBamFile
org.broadinstitute.gatk.utils.exceptions.UserException$FailsStrictValidation
org.broadinstitute.gatk.utils.exceptions.UserException$FileSystemInabilityToLockException
org.broadinstitute.gatk.utils.exceptions.UserException$GVCFIndexException
org.broadinstitute.gatk.utils.exceptions.UserException$IncompatibleReadFiltersException
org.broadinstitute.gatk.utils.exceptions.UserException$IncompatibleRecalibrationTableParameters
org.broadinstitute.gatk.utils.exceptions.UserException$IncompatibleSequenceDictionaries
org.broadinstitute.gatk.utils.exceptions.UserException$KeySignatureVerificationException
org.broadinstitute.gatk.utils.exceptions.UserException$LexicographicallySortedSequenceDictionary
org.broadinstitute.gatk.utils.exceptions.UserException$LocalParallelizationProblem
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedBAM
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedBCF2
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedFile
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedGenomeLoc
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedReadFilterException
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedVCF
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedVCFHeader
org.broadinstitute.gatk.utils.exceptions.UserException$MalformedWalkerArgumentsException
org.broadinstitute.gatk.utils.exceptions.UserException$MisencodedBAM
org.broadinstitute.gatk.utils.exceptions.UserException$MissingArgument
org.broadinstitute.gatk.utils.exceptions.UserException$MissingReferenceDictFile
org.broadinstitute.gatk.utils.exceptions.UserException$MissingReferenceFaiFile
org.broadinstitute.gatk.utils.exceptions.UserException$MissortedBAM
org.broadinstitute.gatk.utils.exceptions.UserException$MissortedFile
org.broadinstitute.gatk.utils.exceptions.UserException$NoSpaceOnDevice
org.broadinstitute.gatk.utils.exceptions.UserException$NotEnoughMemory
org.broadinstitute.gatk.utils.exceptions.UserException$ReadHasUndefinedReadGroup
org.broadinstitute.gatk.utils.exceptions.UserException$ReadMissingReadGroup
org.broadinstitute.gatk.utils.exceptions.UserException$TooManyOpenFiles
org.broadinstitute.gatk.utils.exceptions.UserException$UnknownTribbleType
org.broadinstitute.gatk.utils.exceptions.UserException$UnreadableKeyException
org.broadinstitute.gatk.utils.exceptions.UserException$UnsupportedCigarOperatorException
org.broadinstitute.gatk.utils.exceptions.UserException$VariantContextMissingRequiredField

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All Classes in org.broadinstitute.gatk.utils.exceptions