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Package
Class
Method
Package
org
.
broadinstitute
.
gatk
.
tools
.
walkers
.
haplotypecaller
Subpackages of org.broadinstitute.gatk.tools.walkers.haplotypecaller
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs
org.broadinstitute.gatk.tools.walkers.haplotypecaller.readthreading
All Classes in org.broadinstitute.gatk.tools.walkers.haplotypecaller
org.broadinstitute.gatk.tools.walkers.haplotypecaller.AFPriorProviderUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ActiveRegionTestDataSetUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ActiveRegionTrimmer
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ActiveRegionTrimmer$Result
org.broadinstitute.gatk.tools.walkers.haplotypecaller.AssemblyResult
org.broadinstitute.gatk.tools.walkers.haplotypecaller.AssemblyResultSet
org.broadinstitute.gatk.tools.walkers.haplotypecaller.AssemblyResultSetUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Civar
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Civar$Element
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Civar$ElementOffset
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Civar$Parser
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Civar$Token
org.broadinstitute.gatk.tools.walkers.haplotypecaller.CivarUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.EventBlock
org.broadinstitute.gatk.tools.walkers.haplotypecaller.EventBlockFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.EventBlockFinder$Traversal
org.broadinstitute.gatk.tools.walkers.haplotypecaller.EventBlockFinder$Traversal$Iterator
org.broadinstitute.gatk.tools.walkers.haplotypecaller.GraphBasedLikelihoodCalculationEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.GraphBasedLikelihoodCalculationEngineInstance
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HCLikelihoodCalculationEnginesBenchmark
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HCMappingQualityFilter
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCaller
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerComplexAndSymbolicVariantsIntegrationTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGVCFIntegrationTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGenotypingEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGenotypingEngine$CalledHaplotypes
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGenotypingEngine$Event
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGenotypingEngineUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerGenotypingEngineUnitTest$BasicGenotypingTestProvider
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerIntegrationTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerModesIntegrationTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeCallerParallelIntegrationTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeResolver
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeResolver$VCcontext
org.broadinstitute.gatk.tools.walkers.haplotypecaller.HaplotypeRoute
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KMerCounter
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KMerCounter$CountedKmer
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KMerCounterCaseFixUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.Kmer
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KmerSequence
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KmerSequence$MyKmer
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KmerSequence$MyListIterator
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KmerSequenceGraphMap
org.broadinstitute.gatk.tools.walkers.haplotypecaller.KmerUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.LocalAssemblyEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.LocalAssemblyEngineUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngineUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.RandomLikelihoodCalculationEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadAnchoring
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadCost
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadErrorCorrector
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadErrorCorrector$CorrectionSet
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadErrorCorrector$ReadErrorCorrectionStats
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadErrorCorrectorUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadLikelihoodCalculationEngine
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadSegmentComparator
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadSegmentCost
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReadThreadingLikelihoodCalculationEngineUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.RefVsAnyResult
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReferenceConfidenceModel
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReferenceConfidenceModelUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.ReferenceConfidenceModelUnitTest$RefConfData
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