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Class
Method
Package
org
.
broadinstitute
.
gatk
.
tools
.
walkers
.
haplotypecaller
.
graphs
All Classes in org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.AggregatedSubHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.AggregatedSubHaplotypeFinder$MyKBestHaplotypeResult
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseEdge
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseEdge$EdgeWeightComparator
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseEdgeUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseGraph
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseGraphIterator
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseGraphUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseVertex
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.BaseVertexUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.CommonSuffixMergerUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.CommonSuffixMergerUnitTest$SplitMergeData
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.CommonSuffixSplitter
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.CommonSuffixSplitterUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.DeBruijnVertex
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.DeBruijnVertexUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.DeadEndKBestSubHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.EmptyPathHaplotypeFinderNode
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.EmptyPathHaplotypeFinderNode$MyBestHaplotypePath
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.GraphUtils
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.GraphUtilsUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.HaplotypeGraphUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.KBestHaplotype
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.KBestHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.KBestHaplotypeFinderUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.KBestSubHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.KmerSearchableGraph
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.LowWeightChainPruner
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.LowWeightChainPrunerUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.MultiSampleEdge
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.MultiSampleEdgeUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.MultiSampleEdgeUnitTest$MultiplicityTestProvider
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.Path
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.PathUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.RecursiveSubHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.RecursiveSubHaplotypeFinder$ChildKBestSubHaplotype
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.RecursiveSubHaplotypeFinder$EdgeSubHaplotypeFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.Route
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.RouteFinder
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.RouteUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$MergeCommonSuffices
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$MergeDiamonds
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$MergeTails
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$MyEdgeFactory
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$SplitCommonSuffices
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph$VertexBasedTransformer
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraphUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraphUnitTest$MergeNodesWithNoVariationTestProvider
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqVertex
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqVertexUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SharedSequenceMerger
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SharedVertexSequenceSplitter
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SharedVertexSequenceSplitterUnitTest
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.TestGraph
org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.TestGraph$MyEdgeFactory
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