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Package
Class
Method
Package
org
.
broadinstitute
.
gatk
.
tools
.
walkers
.
annotator
Subpackages of org.broadinstitute.gatk.tools.walkers.annotator
org.broadinstitute.gatk.tools.walkers.annotator.interfaces
org.broadinstitute.gatk.tools.walkers.annotator.snpeff
All Classes in org.broadinstitute.gatk.tools.walkers.annotator
org.broadinstitute.gatk.tools.walkers.annotator.AlleleBalance
org.broadinstitute.gatk.tools.walkers.annotator.AlleleBalanceBySample
org.broadinstitute.gatk.tools.walkers.annotator.AlleleCountBySample
org.broadinstitute.gatk.tools.walkers.annotator.BaseCounts
org.broadinstitute.gatk.tools.walkers.annotator.BaseQualityRankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.ChromosomeCountConstants
org.broadinstitute.gatk.tools.walkers.annotator.ChromosomeCounts
org.broadinstitute.gatk.tools.walkers.annotator.ClippingRankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.Coverage
org.broadinstitute.gatk.tools.walkers.annotator.DepthPerAlleleBySample
org.broadinstitute.gatk.tools.walkers.annotator.DepthPerSampleHC
org.broadinstitute.gatk.tools.walkers.annotator.FisherStrand
org.broadinstitute.gatk.tools.walkers.annotator.GCContent
org.broadinstitute.gatk.tools.walkers.annotator.GenotypeSummaries
org.broadinstitute.gatk.tools.walkers.annotator.GenotypeSummariesUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.HaplotypeScore
org.broadinstitute.gatk.tools.walkers.annotator.HaplotypeScore$Haplotype
org.broadinstitute.gatk.tools.walkers.annotator.HaplotypeScore$HaplotypeComparator
org.broadinstitute.gatk.tools.walkers.annotator.HardyWeinberg
org.broadinstitute.gatk.tools.walkers.annotator.HomopolymerRun
org.broadinstitute.gatk.tools.walkers.annotator.InbreedingCoeff
org.broadinstitute.gatk.tools.walkers.annotator.InbreedingCoeffUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.LikelihoodRankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.LowMQ
org.broadinstitute.gatk.tools.walkers.annotator.MVLikelihoodRatio
org.broadinstitute.gatk.tools.walkers.annotator.MappingQualityRankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.MappingQualityZero
org.broadinstitute.gatk.tools.walkers.annotator.MappingQualityZeroBySample
org.broadinstitute.gatk.tools.walkers.annotator.NBaseCount
org.broadinstitute.gatk.tools.walkers.annotator.PossibleDeNovo
org.broadinstitute.gatk.tools.walkers.annotator.QualByDepth
org.broadinstitute.gatk.tools.walkers.annotator.QualByDepthUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.RMSMappingQuality
org.broadinstitute.gatk.tools.walkers.annotator.RankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.RankSumUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.ReadPosRankSumTest
org.broadinstitute.gatk.tools.walkers.annotator.SampleList
org.broadinstitute.gatk.tools.walkers.annotator.SnpEff
org.broadinstitute.gatk.tools.walkers.annotator.SnpEff$SnpEffEffect
org.broadinstitute.gatk.tools.walkers.annotator.SnpEffUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.SnpEffUtil
org.broadinstitute.gatk.tools.walkers.annotator.SnpEffUtilUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.SpanningDeletions
org.broadinstitute.gatk.tools.walkers.annotator.StrandBiasBySample
org.broadinstitute.gatk.tools.walkers.annotator.StrandBiasTest
org.broadinstitute.gatk.tools.walkers.annotator.StrandOddsRatio
org.broadinstitute.gatk.tools.walkers.annotator.StrandOddsRatioUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.TandemRepeatAnnotator
org.broadinstitute.gatk.tools.walkers.annotator.TransmissionDisequilibriumTest
org.broadinstitute.gatk.tools.walkers.annotator.VariantAnnotator
org.broadinstitute.gatk.tools.walkers.annotator.VariantAnnotatorEngine
org.broadinstitute.gatk.tools.walkers.annotator.VariantAnnotatorEngine$VAExpression
org.broadinstitute.gatk.tools.walkers.annotator.VariantAnnotatorIntegrationTest
org.broadinstitute.gatk.tools.walkers.annotator.VariantOverlapAnnotator
org.broadinstitute.gatk.tools.walkers.annotator.VariantOverlapAnnotatorUnitTest
org.broadinstitute.gatk.tools.walkers.annotator.VariantType
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