Package org.broadinstitute.gatk.tools.walkers.annotator

Examples of org.broadinstitute.gatk.tools.walkers.annotator.VariantOverlapAnnotator


    CloseableIterator<GATKFeature> dbsnpIterator = null;
    VariantOverlapAnnotator variantOverlapAnnotator = null;

    public void initialize() {
        vcfwriter = VariantContextWriterFactory.sortOnTheFly(baseWriter, 40, false);
        variantOverlapAnnotator = new VariantOverlapAnnotator(dbsnp.dbsnp, getToolkit().getGenomeLocParser());
    }
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