Classes and Subpackages of org.broadinstitute.gatk.engine

org.broadinstitute.gatk.engine.CommandLineExecutable
org.broadinstitute.gatk.engine.CommandLineGATK
org.broadinstitute.gatk.engine.CommandLineGATKUnitTest
org.broadinstitute.gatk.engine.EngineFeaturesIntegrationTest
org.broadinstitute.gatk.engine.EngineFeaturesIntegrationTest$DummyReadWalkerWithMapqUnavailableFilter
org.broadinstitute.gatk.engine.EngineFeaturesIntegrationTest$EngineErrorHandlingTestProvider
org.broadinstitute.gatk.engine.EngineFeaturesIntegrationTest$OnTheFlySampleRenamingVerifyingRodWalker
org.broadinstitute.gatk.engine.EngineFeaturesIntegrationTest$OnTheFlySampleRenamingVerifyingTestWalker
org.broadinstitute.gatk.engine.GenomeAnalysisEngine
org.broadinstitute.gatk.engine.GenomeAnalysisEngineUnitTest
org.broadinstitute.gatk.engine.GenomeAnalysisEngineUnitTest$TestReadTransformer
org.broadinstitute.gatk.engine.HelpEntry
org.broadinstitute.gatk.engine.HelpEntryComparator
org.broadinstitute.gatk.engine.MaxRuntimeIntegrationTest
org.broadinstitute.gatk.engine.MaxRuntimeIntegrationTest$MaxRuntimeTestProvider
org.broadinstitute.gatk.engine.MaxRuntimeIntegrationTest$SleepingWalker
org.broadinstitute.gatk.engine.ReadMetrics
org.broadinstitute.gatk.engine.ReadMetricsUnitTest
org.broadinstitute.gatk.engine.ReadMetricsUnitTest$DummyActiveRegionWalker
org.broadinstitute.gatk.engine.ReadMetricsUnitTest$DummyLocusWalker
org.broadinstitute.gatk.engine.ReadMetricsUnitTest$DummyReadWalker
org.broadinstitute.gatk.engine.ReadMetricsUnitTest$EveryTenthReadFilter
org.broadinstitute.gatk.engine.ReadProperties
org.broadinstitute.gatk.engine.UninstantiableWalker
org.broadinstitute.gatk.engine.WalkerManager
org.broadinstitute.gatk.engine.WalkerManagerUnitTest

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Subpackages of org.broadinstitute.gatk.engine

All Classes in org.broadinstitute.gatk.engine