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broadinstitute
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gatk
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engine
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filters
All Classes in org.broadinstitute.gatk.engine.filters
org.broadinstitute.gatk.engine.filters.AllowNCigarMalformedReadFilterUnitTest
org.broadinstitute.gatk.engine.filters.BadCigarFilter
org.broadinstitute.gatk.engine.filters.BadCigarFilterUnitTest
org.broadinstitute.gatk.engine.filters.BadMateFilter
org.broadinstitute.gatk.engine.filters.BadReadGroupsIntegrationTest
org.broadinstitute.gatk.engine.filters.CountingFilteringIterator
org.broadinstitute.gatk.engine.filters.CountingFilteringIterator$CountingReadFilter
org.broadinstitute.gatk.engine.filters.DuplicateReadFilter
org.broadinstitute.gatk.engine.filters.FailsVendorQualityCheckFilter
org.broadinstitute.gatk.engine.filters.FilterManager
org.broadinstitute.gatk.engine.filters.LibraryReadFilter
org.broadinstitute.gatk.engine.filters.MalformedReadFilter
org.broadinstitute.gatk.engine.filters.MalformedReadFilterUnitTest
org.broadinstitute.gatk.engine.filters.MappingQualityFilter
org.broadinstitute.gatk.engine.filters.MappingQualityUnavailableFilter
org.broadinstitute.gatk.engine.filters.MappingQualityZeroFilter
org.broadinstitute.gatk.engine.filters.MateSameStrandFilter
org.broadinstitute.gatk.engine.filters.MaxInsertSizeFilter
org.broadinstitute.gatk.engine.filters.MissingReadGroupFilter
org.broadinstitute.gatk.engine.filters.NDNCigarReadTransformer
org.broadinstitute.gatk.engine.filters.NDNCigarReadTransformerUnitTest
org.broadinstitute.gatk.engine.filters.NoOriginalQualityScoresFilter
org.broadinstitute.gatk.engine.filters.NotPrimaryAlignmentFilter
org.broadinstitute.gatk.engine.filters.Platform454Filter
org.broadinstitute.gatk.engine.filters.PlatformFilter
org.broadinstitute.gatk.engine.filters.PlatformUnitFilter
org.broadinstitute.gatk.engine.filters.PlatformUnitFilterHelper
org.broadinstitute.gatk.engine.filters.ReadFilter
org.broadinstitute.gatk.engine.filters.ReadFilterTest
org.broadinstitute.gatk.engine.filters.ReadGroupBlackListFilter
org.broadinstitute.gatk.engine.filters.ReadGroupBlackListFilterUnitTest
org.broadinstitute.gatk.engine.filters.ReadLengthFilter
org.broadinstitute.gatk.engine.filters.ReadNameFilter
org.broadinstitute.gatk.engine.filters.ReadStrandFilter
org.broadinstitute.gatk.engine.filters.ReassignMappingQualityFilter
org.broadinstitute.gatk.engine.filters.ReassignOneMappingQualityFilter
org.broadinstitute.gatk.engine.filters.SampleFilter
org.broadinstitute.gatk.engine.filters.SingleReadGroupFilter
org.broadinstitute.gatk.engine.filters.UnmappedReadFilter
org.broadinstitute.gatk.engine.filters.UnsafeMalformedReadFilterUnitTest
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