Classes and Subpackages of org.broad.igv.sam.reader

org.broad.igv.sam.reader.AlignmentIndexer
org.broad.igv.sam.reader.AlignmentParser
org.broad.igv.sam.reader.AlignmentReader
org.broad.igv.sam.reader.AlignmentReaderFactory
org.broad.igv.sam.reader.AlignmentReaderFactoryTest
org.broad.igv.sam.reader.BAMFileReader
org.broad.igv.sam.reader.BAMHttpQueryReaderTest
org.broad.igv.sam.reader.BAMHttpReader
org.broad.igv.sam.reader.CGIAlignmentReader
org.broad.igv.sam.reader.CGIAlignmentReaderTest
org.broad.igv.sam.reader.DotAlignedCodec
org.broad.igv.sam.reader.DotAlignedIndexer
org.broad.igv.sam.reader.DotAlignedParser
org.broad.igv.sam.reader.FeatureIndex
org.broad.igv.sam.reader.FeatureIndex$ChromosomeIndex
org.broad.igv.sam.reader.FeatureIndex$TileDef
org.broad.igv.sam.reader.GeraldReader
org.broad.igv.sam.reader.GeraldReader$GeraldIterator
org.broad.igv.sam.reader.GeraldReader$GeraldQueryIterator
org.broad.igv.sam.reader.IndexLoadException
org.broad.igv.sam.reader.IndexNotFoundException
org.broad.igv.sam.reader.MergedAlignmentReader
org.broad.igv.sam.reader.MergedAlignmentReader$MergedFileIterator
org.broad.igv.sam.reader.MergedAlignmentReader$MergedFileIterator$AlignmentStartComparator
org.broad.igv.sam.reader.MergedAlignmentReader$MergedFileIterator$RecordIterWrapper
org.broad.igv.sam.reader.MergedAlignmentReaderTest
org.broad.igv.sam.reader.PSLAlignmentParser
org.broad.igv.sam.reader.ReadGroupFilter
org.broad.igv.sam.reader.SAMFileGroup
org.broad.igv.sam.reader.SAMFileGroup$SamGroupIterator
org.broad.igv.sam.reader.SAMQueryIterator
org.broad.igv.sam.reader.SAMReader
org.broad.igv.sam.reader.SAMReaderTest
org.broad.igv.sam.reader.SamIndexer
org.broad.igv.sam.reader.SamUtils
org.broad.igv.sam.reader.SolexaQualityConverter
org.broad.igv.sam.reader.UnsortedFileException
org.broad.igv.sam.reader.WrappedIterator

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All Classes in org.broad.igv.sam.reader