Package org.broad.igv.sam.reader

Examples of org.broad.igv.sam.reader.WrappedIterator


    public Iterator<PicardAlignment> decodeAll(InputStream is, boolean strictParsing) throws IOException {
        SAMFileReader reader = new SAMFileReader(is);
        ValidationStringency stringency =
                strictParsing ? ValidationStringency.STRICT : ValidationStringency.SILENT;
        reader.setValidationStringency(stringency);
        return new WrappedIterator(reader.iterator());
    }
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Related Classes of org.broad.igv.sam.reader.WrappedIterator

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