Examples of run()


Examples of au.org.intersect.samifier.runner.VirtualProteinMergerRunner.run()

            }
           
            VirtualProteinMergerRunner virtualProteinMergerRunner = new VirtualProteinMergerRunner(
                    searchResultsPaths, translationTableFile, genomeFile,
                    chromosomeDir, outputWriter, confidenceScore);
            virtualProteinMergerRunner.run();
        } catch (ParseException pe) {
            System.err.println("Version = " + VERSION);
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("virtual_protein_merger", options, true);
            System.exit(1);
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Examples of avrora.actions.Action.run()

        Action a = Defaults.getAction(ACTION.get());
        if (a == null)
            Avrora.userError("Unknown Action", StringUtil.quote(ACTION.get()));

        a.options.process(mainOptions);
        a.run(mainOptions.getArguments());
    }

    private static void loadUserDefaults() throws IOException {
        String hdir = System.getProperty("user.home");
        if (hdir == null || "".equals(hdir)) return;
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Examples of avrora.stack.Analyzer.run()

        Analyzer.USE_ISEA = USE_ISEA.get();
        Analyzer.SHOW_PATH = SHOW_PATH.get();
        Analyzer.reserve = new byte[(int)(RESERVE.get() * MEGABYTES)];
        Analyzer a = new Analyzer(p);

        a.run();
        a.report();

        if (DUMP_STATE_SPACE.get())
            a.dump();
    }
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Examples of azkaban.common.jobs.Job.run()

        final IndividualJobExecutableFlow executableFlow = new IndividualJobExecutableFlow("blah", "blah", jobManager);

        EasyMock.expect(jobManager.loadJob("blah", overrideProps, true)).andReturn(mockJob).once();
        EasyMock.expect(mockJob.getId()).andReturn("success Job").once();

        mockJob.run();
        EasyMock.expectLastCall().andAnswer(new IAnswer<Void>()
        {
            @Override
            public Void answer() throws Throwable
            {
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Examples of azkaban.util.process.AzkabanProcess.run()

    @Test
    public void helloWorld() throws Exception {
        AzkabanProcess process = new AzkabanProcessBuilder("echo", "hello", "world").build();
        assertTrue("Process is not started.", !process.isStarted());
        assertTrue("Process is not running.", !process.isRunning());
        process.run();
        assertTrue("Process should be set.", process.getProcessId() > 0);
        assertTrue("After running, process should be complete.", process.isComplete());
        assertTrue("Process is not running.", !process.isRunning());
    }
   
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Examples of basicrunner.BasicIfcTest.run()

                }

                BasicIfcTest ifc = null;
                lib.TestResult res = null;
                ifc = new BasicIfcTest(entry.SubEntries[j].longName);
                res = ifc.run(entry.SubEntries[j], tEnv, param);

                sumIt.summarizeUp(entry.SubEntries[j]);

                LogWriter sumIfc = OutProducerFactory.createOutProducer(param);
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Examples of bear.main.Script.run()

                                    script.setParent(_parent);
                                    $.wire(script);
                                    script.task = $this;
                                    script.configure();
                                    script.global = global;
                                    return script.run();
                                } else {
                                    GroovyShell shell = getShell(runner);
                                    shell.evaluate(command);
                                }
                            } catch (Throwable e) {
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Examples of bitronix.tm.recovery.Recoverer.run()

        poolingDataSource.setUniqueName("ds1");
        poolingDataSource.setMaxPoolSize(1);
        poolingDataSource.init();

        Recoverer recoverer = new Recoverer();
        recoverer.run();
        assertEquals("a PoolingDataSource containing an XAPool of resource ds1 with 0 connection(s) (0 still available) -failed-", poolingDataSource.toString());
        // recoverer must not unregister the resource
        assertSame(poolingDataSource, ResourceRegistrar.get("ds1"));

        MockitoXADataSource.setStaticGetXAConnectionException(null);
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Examples of bsh.Interpreter.run()

            bsh = createInterpreter(in, out, err, true);
            interactive = true;
        }

        if (interactive) {
            bsh.run();
        }
    }

    private Interpreter createInterpreter(
            InputStream in, OutputStream out, OutputStream err, boolean interactive)
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Examples of ca.eandb.jdcp.job.ParallelizableJobRunner.run()

    File base = new File("C:\\Users\\Brad\\My Documents\\jmist");
    UUID id = UUID.randomUUID();
    File dir = new File(base, id.toString());

    Runnable runner = new ParallelizableJobRunner(job, dir, Executors.newFixedThreadPool(threads, new BackgroundThreadFactory()), threads, panel, panel.createProgressMonitor("Rendering Cornell Box"));//Runtime.getRuntime().availableProcessors());
    runner.run();

  }

}
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