flags.flag_file = "";
List<String> processedFileArgs
= processArgs(argsInFile.toArray(new String[] {}));
CmdLineParser parserFileArgs = new CmdLineParser(flags);
Flags.warningGuardSpec.clear();
parserFileArgs.parseArgument(processedFileArgs.toArray(new String[] {}));
// Currently we are not supporting this (prevent direct/indirect loops)
if (!flags.flag_file.equals("")) {
err.println("ERROR - Arguments in the file cannot contain "
+ "--flagfile option.");