Examples of java.util.BitSet.nextSetBit()

java.util.BitSet.nextSetBit()
ate on index i here } @param fromIndex the index to start checking from (inclusive). @return the index of the next set bit. @throws IndexOutOfBoundsException if the specified index is negative. @since 1.4

        Parser.setSelectedFloats(Parser.parseFloat(stringData), bs, f);
      } else if (field == 0 || field == Integer.MAX_VALUE) {
        // just get the selected token values
        bs = (BitSet) data[2];
        if (floatData != null) {
          for (int i = bs.nextSetBit(0); i >= 0; i = bs.nextSetBit(i + 1)) 
            f[i] = floatData[i];
        } else {
          Parser.parseFloatArray(strData == null ? Parser.getTokens(stringData)
            : strData, bs, f);
        }

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        Parser.setSelectedFloats(Parser.parseFloat(stringData), bs, f);
      } else if (field == 0 || field == Integer.MAX_VALUE) {
        // just get the selected token values
        bs = (BitSet) data[2];
        if (floatData != null) {
          for (int i = bs.nextSetBit(0); i >= 0; i = bs.nextSetBit(i + 1)) 
            f[i] = floatData[i];
        } else {
          Parser.parseFloatArray(strData == null ? Parser.getTokens(stringData)
            : strData, bs, f);
        }

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          Logger.error("Unknown atom property: " + type);
          return;
        }
        int nValues = bs.cardinality();
        float[] fValues = new float[nValues];
        for (int n = 0, i = bs.nextSetBit(0); n < nValues; i = bs
            .nextSetBit(i + 1))
          fValues[n++] = f[i];
        viewer.setAtomProperty(bs, tok, 0, 0, null, fValues, null);
        return;
      }

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          Logger.error("Unknown atom property: " + type);
          return;
        }
        int nValues = bs.cardinality();
        float[] fValues = new float[nValues];
        for (int n = 0, i = bs.nextSetBit(0); n < nValues; i = bs
            .nextSetBit(i + 1))
          fValues[n++] = f[i];
        viewer.setAtomProperty(bs, tok, 0, 0, null, fValues, null);
        return;
      }

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          // three or four are not in a ring. So let's find the shortest two
          // branches and invert them.
          int[] lengths = new int[nb];
          int[] points = new int[nb];
          int ni = 0;
          for (int i = bs.nextSetBit(0); i >= 0; i = bs.nextSetBit(i + 1), ni++) {
            lengths[ni] = viewer.getBranchBitSet(i, atomIndex).cardinality();
            points[ni] = i;
          }
          for (int j = 0; j < nb - 2; j++) {
            int max = Integer.MIN_VALUE;

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          // three or four are not in a ring. So let's find the shortest two
          // branches and invert them.
          int[] lengths = new int[nb];
          int[] points = new int[nb];
          int ni = 0;
          for (int i = bs.nextSetBit(0); i >= 0; i = bs.nextSetBit(i + 1), ni++) {
            lengths[ni] = viewer.getBranchBitSet(i, atomIndex).cardinality();
            points[ni] = i;
          }
          for (int j = 0; j < nb - 2; j++) {
            int max = Integer.MIN_VALUE;

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    Point3f[] pts = new Point3f[] { pt };
    List vConnections = new ArrayList();
    vConnections.add(atom);
    try {
      bs = addHydrogensInline(bs, vConnections, pts);
      atomIndex = bs.nextSetBit(0);
      modelSet.assignAtom(atomIndex, type, false);
    } catch (Exception e) {
      //
    }
    modelSet.setAtomNamesAndNumbers(atomIndex, -1, null);

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      bsAtoms = null;
    }
    BitSet bs = viewer.getModelUndeletedAtomsBitSet(modelIndex);
    if (bsAtoms != null)
      bs.and(bsAtoms);
    iAtom = bs.nextSetBit(0);
    if (iAtom < 0) {
      bs = viewer.getModelUndeletedAtomsBitSet(modelIndex);
      iAtom = bs.nextSetBit(0);
    }
    Object obj = viewer.getShapeProperty(JmolConstants.SHAPE_VECTORS, "mad", iAtom);

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    if (bsAtoms != null)
      bs.and(bsAtoms);
    iAtom = bs.nextSetBit(0);
    if (iAtom < 0) {
      bs = viewer.getModelUndeletedAtomsBitSet(modelIndex);
      iAtom = bs.nextSetBit(0);
    }
    Object obj = viewer.getShapeProperty(JmolConstants.SHAPE_VECTORS, "mad", iAtom);
    boolean haveVibration = (obj != null && ((Integer) obj).intValue() != 0 || viewer
        .isVibrationOn());
    SymmetryInterface symmetry = (SymmetryInterface) Interface

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    if (nModelsDeleted == 0)
      return null;


    // clear references to this frame if it is a dataFrame


    for (int i = bsModels.nextSetBit(0); i >= 0; i = bsModels.nextSetBit(i + 1))
      clearDataFrameReference(i);


    BitSet bsDeleted;
    if (nModelsDeleted == modelCount) {
      bsDeleted = getModelAtomBitSetIncludingDeleted(-1, true);

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