Examples of distributePartners()

Examples of org.openscience.cdk.layout.AtomPlacer.distributePartners()

684
685
686
687
688
689
690
691
692
693
694
      IAtomContainer unplacedAtoms = atomCon.getBuilder()
          .newInstance(IAtomContainer.class);
      unplacedAtoms.addAtom(newAtom);

      atomPlacer.distributePartners(atom, placedAtoms, center2D,
          unplacedAtoms, bondLength);
    }

    atomCon.addAtom(newAtom);
    atomCon.addBond(newBond);
View Full Code Here

Examples of org.openscience.cdk.layout.AtomPlacer.distributePartners()

165
166
167
168
169
170
171
172
173
174
175
                        if(l.get(i).getPoint2d()!=null)
                            placedNeighbours.addAtom((IAtom)l.get(i));
                        else
                            unplacedNeighbours.addAtom((IAtom)l.get(i));
                    }
                    ap.distributePartners(lastplaced, placedNeighbours, GeometryTools.get2DCenter(placedNeighbours), unplacedNeighbours, 1.4);
                    IRingSet ringset=new SSSRFinder(container).findSSSR();
                    for(IAtomContainer ring:ringset.atomContainers()){
                        ringPlacer.placeRing((IRing)ring, GeometryTools.get2DCenter(container), chemModelRelay.getRenderer().getRenderer2DModel().getBondLength() / chemModelRelay.getRenderer().getRenderer2DModel().getScale());
                    }
                    lastplaced=container.getAtom(counter);
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.