Package org.openscience.cdk.layout

Examples of org.openscience.cdk.layout.AtomPlacer.distributePartners()

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      IAtomContainer unplacedAtoms = atomCon.getBuilder()
          .newInstance(IAtomContainer.class);
      unplacedAtoms.addAtom(newAtom);

      atomPlacer.distributePartners(atom, placedAtoms, center2D,
          unplacedAtoms, bondLength);
    }

    atomCon.addAtom(newAtom);
    atomCon.addBond(newBond);
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                        if(l.get(i).getPoint2d()!=null)
                            placedNeighbours.addAtom((IAtom)l.get(i));
                        else
                            unplacedNeighbours.addAtom((IAtom)l.get(i));
                    }
                    ap.distributePartners(lastplaced, placedNeighbours, GeometryTools.get2DCenter(placedNeighbours), unplacedNeighbours, 1.4);
                    IRingSet ringset=new SSSRFinder(container).findSSSR();
                    for(IAtomContainer ring:ringset.atomContainers()){
                        ringPlacer.placeRing((IRing)ring, GeometryTools.get2DCenter(container), chemModelRelay.getRenderer().getRenderer2DModel().getBondLength() / chemModelRelay.getRenderer().getRenderer2DModel().getScale());
                    }
                    lastplaced=container.getAtom(counter);
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