Examples of RnaSpecificCostFunction

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

65
66
67
68
69
70
71
72
73
74
75
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

616
617
618
619
620
621
622
623
624
625
626
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    RNASpecificTree t = new RNASpecificTree();
View Full Code Here

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

49
50
51
52
53
54
55
56
57
58
59
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

113
114
115
116
117
118
119
120
121
122
123
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

251
252
253
254
255
256
257
258
259
260
261
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

739
740
741
742
743
744
745
746
747
748
749
        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    RNASpecificTree t = new RNASpecificTree();
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.