Package bgu.bio.adt.rna.costs

Examples of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here
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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    RNASpecificTree t = new RNASpecificTree();
View Full Code Here
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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here
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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here
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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    final RNASpecificTree t = new RNASpecificTree("T");
View Full Code Here
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        10, 10, RnaAlphabet.getInstance(), new AffineGapScoringMatrix(
            "matrix" + File.separator
                + "interval-RIBOSUM85-60.matrix",
            RnaAlphabet.getInstance()));

    RnaSpecificCostFunction cost = new RnaSpecificCostFunction(
        new ScoringMatrix("matrix" + File.separator
            + "bp-RIBOSUM85-60.matrix",
            RNABasePairAlphabet.getInstance()), aligner);

    RNASpecificTree t = new RNASpecificTree();
View Full Code Here
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Related Classes of bgu.bio.adt.rna.costs.RnaSpecificCostFunction

  • bgu.bio.adt.rna.NodeLabel
  • bgu.bio.algorithms.graphs.Test
  • bgu.bio.algorithms.graphs.TestHSA
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