Examples of QcMLFileReader

Examples of inspector.jqcml.io.xml.QcMLFileReader

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  private QcMLFileReader reader;

    @Before
    public void setUp() {
        reader = new QcMLFileReader();
  }
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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    qcmlExpected.addCv(new Cv("cv item 10", "/path/to/cv/10", "cv_10"));
    qcmlExpected.addCv(new Cv("cv item 11", "/path/to/cv/11", "cv_11"));
    qcmlExpected.addCv(new Cv("cv item 12", "/path/to/cv/12", "cv_12"));
   
    // read qcML
    qcml = new QcMLFileReader().getQcML(getClass().getResource("/QcMLTest.qcML").getFile());
  }
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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    assertNull(qcml.getSetQuality(null));
  }
 
  @Test
  public void getSetQuality_noSet() {
    qcml = new QcMLFileReader().getQcML(getClass().getResource("/NoSet.qcML").getFile());
   
    assertEquals(qcml.getNumberOfSetQualities(), 0); 

    assertNull(qcml.getSetQuality("set_1"));
    assertNull(qcml.getSetQuality("non-existing id"));
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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  private QcML qcml;
 
  @Before
  public void setUp() {
    qcml = new QcMLFileReader().getQcML(getClass().getResource("/CvParameterTest.qcML").getFile());
  }
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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        // input source
        String qcmlStr = cmd.getOptionValue("qcml");
                QcMLReader reader;
                EntityManagerFactory emf = null;
                if(cmd.hasOption("f"))
                    reader = new QcMLFileReader();
                else if(cmd.hasOption("db")) {
                    emf = createEntityManagerFactory(cmd);
                    reader = new QcDBReader(emf);
                }
                else {
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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        // write the object to a file
        QcMLFileWriter writer = new QcMLFileWriter();
        writer.writeQcML(qcmlExpected);

        // read it back in
        QcMLFileReader reader = new QcMLFileReader();
        QcML qcmlRead = reader.getQcML(getClass().getResource("/WriteReadFileTest.qcML").getFile());
    qcmlRead.setFileName(getClass().getResource("/").getPath() + "WriteReadFileTest.qcML");

        assertEquality(qcmlExpected, qcmlRead);
    }
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Examples of inspector.jqcml.io.xml.QcMLFileReader

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  private QcML qcml;
 
  @Before
  public void setUp() {
    qcml = new QcMLFileReader().getQcML(getClass().getResource("/CvParameterTest.qcML").getFile());
  }
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