Package picard.sam

Examples of picard.sam.DuplicationMetrics


    public LibraryIdGenerator(final SAMFileHeader header) {
        this.header = header;

        for (final SAMReadGroupRecord readGroup : header.getReadGroups()) {
            final String library = readGroup.getLibrary();
            DuplicationMetrics metrics = metricsByLibrary.get(library);
            if (metrics == null) {
                metrics = new DuplicationMetrics();
                metrics.LIBRARY = library;
                metricsByLibrary.put(library, metrics);
            }
        }
    }
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Related Classes of picard.sam.DuplicationMetrics

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