Classes and Subpackages of picard.sam

picard.sam.AbstractAlignmentMerger
picard.sam.AddCommentsToBam
picard.sam.AddCommentsToBamTest
picard.sam.AddOrReplaceReadGroups
picard.sam.BamIndexStats
picard.sam.BestEndMapqPrimaryAlignmentStrategy
picard.sam.BestEndMapqPrimaryAlignmentStrategy$MapqComparator
picard.sam.BestMapqPrimaryAlignmentSelectionStrategy
picard.sam.BuildBamIndex
picard.sam.CalculateReadGroupChecksum
picard.sam.CheckTerminatorBlock
picard.sam.CleanSam
picard.sam.CleanSamTest
picard.sam.CompareSAMs
picard.sam.CompareSAMsTest
picard.sam.CreateSequenceDictionary
picard.sam.CreateSequenceDictionaryTest
picard.sam.DownsampleSam
picard.sam.DuplicationMetrics
picard.sam.EarliestFragmentPrimaryAlignmentSelectionStrategy
picard.sam.FastqToSam
picard.sam.FastqToSamTest
picard.sam.FilterSamReads
picard.sam.FixMateInformation
picard.sam.GatherBamFiles
picard.sam.GatherBamFilesTest
picard.sam.HitsForInsert
picard.sam.HitsForInsert$HitIndexComparator
picard.sam.MergeBamAlignment
picard.sam.MergeBamAlignmentTest
picard.sam.MergeBamAlignmentTest$AlignmentAccumulator
picard.sam.MergeBamAlignmentTest$HitSpec
picard.sam.MergeBamAlignmentTest$MostDistantStrategyAlignmentSpec
picard.sam.MergeBamAlignmentTest$MultipleAlignmentSpec
picard.sam.MergeSamFiles
picard.sam.MergeSamFilesTest
picard.sam.MostDistantPrimaryAlignmentSelectionStrategy
picard.sam.MostDistantPrimaryAlignmentSelectionStrategy$BestEndAlignmentsAccumulator
picard.sam.MostDistantPrimaryAlignmentSelectionStrategy$BestPairAlignmentsAccumulator
picard.sam.MultiHitAlignedReadIterator
picard.sam.PrimaryAlignmentSelectionStrategy
picard.sam.ReorderSam
picard.sam.ReplaceSamHeader
picard.sam.RevertOriginalBaseQualitiesAndAddMateCigar
picard.sam.RevertSam
picard.sam.RevertSamTest
picard.sam.SamAlignmentMerger
picard.sam.SamAlignmentMerger$SeparateEndAlignmentIterator
picard.sam.SamAlignmentMerger$SuffixTrimingSamRecordIterator
picard.sam.SamFormatConverter
picard.sam.SamToFastq
picard.sam.SamToFastq$FastqWriters
picard.sam.SamToFastqTest
picard.sam.SamToFastqTest$MatePair
picard.sam.SortSam
picard.sam.SplitSamByLibrary
picard.sam.SplitSamByLibraryTest
picard.sam.ValidateSamFile
picard.sam.ViewSam
picard.sam.ViewSamTest

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Subpackages of picard.sam

All Classes in picard.sam