Examples of org.mmisw.ont.mmiuri.MmiUri

org.mmisw.ont.mmiuri.MmiUri

.org in the example) and the "root" directory component (ont in the example).

The following requested URI is used as example to illustrate the various operations:

 http://mmisw.org/ont/mmi/someVocab.owl/someTerm

Note that the "extension" (.owl) can also be indicated in the term component, eg.,

 http://mmisw.org/ont/mmi/someVocab/someTerm.owl

The two strings refer to the same ontology and term.

Note that the extension is NOT included in any of the report operations except {@link #getExtension()}.

As a concrete example with all the main operations:

 MmiUri mmiUri = new MmiUri("http://mmisw.org/ont/mmi/someVocab/someTerm.owl"); assertEquals("http://mmisw.org/ont/mmi/someVocab",          mmiUri.getOntologyUri()); assertEquals("http://mmisw.org/ont/mmi/someVocab/someTerm", mmiUri.getTermUri()); assertEquals("mmi",       mmiUri.getAuthority()); assertEquals(null,        mmiUri.getVersion()); assertEquals("someVocab", mmiUri.getTopic()); assertEquals("someTerm",  mmiUri.getTerm()); assertEquals(".owl",      mmiUri.getExtension()); assertEquals("http://mmisw.org/ont/",  mmiUri.getUntilRoot());

@author Carlos Rueda

    }


    public void testAcceptUntilAuthority() throws URISyntaxException {
      
      // actually only until the authority:
      MmiUri mmiUri = new MmiUri("http://mmisw.org/ont/mmi", true);
      assertEquals("mmi", mmiUri.getAuthority());
      assertEquals("", mmiUri.getExtension());
      assertEquals("", mmiUri.getTopic());
      
      // actually only until the authority including extension:
      mmiUri = new MmiUri("http://mmisw.org/ont/mmi.rdf", true);
      assertEquals("mmi", mmiUri.getAuthority());
      assertEquals(".rdf", mmiUri.getExtension());
      assertEquals("", mmiUri.getTopic());
      
      // but with other stuff as well:
      mmiUri = new MmiUri("http://mmisw.org/ont/mmi/someVocab", true);
      assertEquals("someVocab", mmiUri.getTopic());
      assertEquals("mmi", mmiUri.getAuthority());
    }

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    final Model model2update = _infModel != null ? _infModel : _model;
    if ( USE_UNVERSIONED ) {
      OntModel model = JenaUtil2.loadModel("file:" +full_path, false);


      if ( OntUtil.isOntResolvableUri(ontology.getUri()) ) {
        MmiUri mmiUri;
        try {
          mmiUri = new MmiUri(ontology.getUri());
          OntModel unversionedModel = UnversionedConverter.getUnversionedModel(model, mmiUri);
          model2update.add(unversionedModel);
        }
        catch (URISyntaxException e) {
          log.error("shouldn't happen", e);

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    // get ontologyUriPattern to do the "like" query:
    String ontologyUriPattern;
    try {
      // use "%" for the version:
      MmiUri mmiUriPatt = mmiUri.copyWithVersionNoCheck("%");
      ontologyUriPattern = mmiUriPatt.getOntologyUri();
    }
    catch (URISyntaxException e) {
      // should not occur.
      log.debug("should not occur.", e);
      return onts;

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  public OntologyInfo getRegisteredOntologyLatestVersion(String potentialOntUri) throws ServletException  {
    log.debug("getRegisteredOntologyLatestVersion: " +potentialOntUri);
    OntologyInfo ontology = null;
    if ( OntUtil.isOntResolvableUri(potentialOntUri) ) {
      try {
        MmiUri mmiUri = new MmiUri(potentialOntUri);
        // ignore version:
        mmiUri = mmiUri.copyWithVersion(null);
        ontology = getMostRecentOntologyVersion(mmiUri);
      }
      catch (URISyntaxException e) {
        // Not an MmiUri. Just try to use the argument as given:
        ontology = getOntology(potentialOntUri);

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    if ( USE_UNVERSIONED ) {
      OntModel model = JenaUtil2.loadModel("file:" +full_path, false);


      if ( OntUtil.isOntResolvableUri(ontologyUri) ) {
        MmiUri mmiUri;
        try {
          mmiUri = new MmiUri(ontologyUri);
          OntModel unversionedModel = UnversionedConverter.getUnversionedModel(model, mmiUri);
          
          serialization = JenaUtil2.getOntModelAsString(unversionedModel, "RDF/XML-ABBREV");
          
          ontologyUri = mmiUri.copyWithVersion(null).getOntologyUri();
        }
        catch (URISyntaxException e) {
          log.error("shouldn't happen", e);
          return ;
        }

View Full Code Here

    String ontologyUri = ontology.getUri();
    
    if ( USE_UNVERSIONED ) {


      if ( OntUtil.isOntResolvableUri(ontologyUri) ) {
        MmiUri mmiUri;
        try {
          mmiUri = new MmiUri(ontologyUri);
          ontologyUri = mmiUri.copyWithVersion(null).getOntologyUri();
        }
        catch (URISyntaxException e) {
          log.error("shouldn't happen", e);
          return ;
        }

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  throws ServletException, IOException {
    OntologyInfo ontology = db.getMostRecentOntologyVersion(req.mmiUri);
    if ( ontology != null ) {
      ontOrEntUri = ontology.getUri();
      
      MmiUri foundMmiUri;
      
      try {
        //
        // Note that mostRecentOntology.getUri() won't have the term component.
        // So, we have to transfer it to foundMmiUri:
        //
        foundMmiUri = new MmiUri(ontology.getUri()).copyWithTerm(req.mmiUri.getTerm());
        
        if ( log.isDebugEnabled() ) {
          log.debug("Found ontology version: " +ontology.getUri());


          if ( ! req.mmiUri.getExtension().equals(foundMmiUri.getExtension()) ) {
            log.debug("Restored requested extension to: " +req.mmiUri);
          }
        }
        
        // also, restore the original requested extension:
        foundMmiUri = foundMmiUri.copyWithExtension(req.mmiUri.getExtension());
      }
      catch (URISyntaxException e) {
        if ( log.isDebugEnabled() ) {
          log.debug("Shouldn't happen", e);
        }

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      if ( log.isDebugEnabled() ) {
        log.debug("_getRegisteredOntology: isOntResolvableUri: yes");
      }


      try {
        MmiUri mmiUri = new MmiUri(potentialOntUri);
        
        if ( mmiUri.getTerm().length() > 0 ) {
          // potentialOntUri corresponds to a term, not an ontology:
          if ( log.isDebugEnabled() ) {
            log.debug("_getRegisteredOntology: is a term, returning null.");
          }
          return null;
        }
        
        if ( mmiUri.getVersion() == null ) {
          // unversioned request.  Get most recent
          if ( log.isDebugEnabled() ) {
            log.debug("_getRegisteredOntology: unversioned request.");
          }

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      if ( log.isDebugEnabled() ) {
        log.debug("getRegisteredOntology: isOntResolvableUri.");
      }


      try {
        MmiUri mmiUri = new MmiUri(potentialOntUri);
        if ( mmiUri.getVersion() == null ) {
          // unversioned request.  Get most recent
          if ( log.isDebugEnabled() ) {
            log.debug("getRegisteredOntology: unversioned request.");
          }

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    // version from versioned ontology mmiUri, if given:
    String version2 = null;
    
    if ( OntUtil.isOntResolvableUri(ontUri) ) {
      try {
        MmiUri mmiUri = new MmiUri(ontUri);
        version2 = mmiUri.getVersion();
        
        if ( version2 == null || version2.length() == 0 ) {
          // insert the version fragment so we are able to search in the database
          ontUri = mmiUri.copyWithVersion(version).getOntologyUri();
          if ( log.isDebugEnabled() ) {
            log.debug("_unregisterOntology: inserted version fragment: " +ontUri);
          }


        }

View Full Code Here

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