Package org.datacontract.schemas._2004._07.ManipulationParameter

Examples of org.datacontract.schemas._2004._07.ManipulationParameter.NodeBiomass

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    }
   */
    public void updateBiomass(String manipulationId, List<NodeBiomass> lNodeBiomass, int timestep) throws SimulationException {
        long milliseconds = System.currentTimeMillis();

        ManipulatingNode node = new ManipulatingNode();
        node.setTimestepIdx(timestep);
        node.setManipulationActionType(ManipulationActionType.MULTIPLE_BIOMASS_UPDATE.getManipulationActionType());
        ManipulatingNode[] nodes = new ManipulatingNode[1];
        nodes[0] = node;
       
        SimpleManipulationRequest smr = new SimpleManipulationRequest();
        smr.setUser(user);
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        List<ManipulatingParameter> sysParamList = new ArrayList<ManipulatingParameter>();
        ManipulatingNode[] nodes = new ManipulatingNode[speciesList.size()];
        int i = 0;
        for(SpeciesZoneType species : speciesList)
        {
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(timestep);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(species.getNodeIndex());
            node.setBeginingBiomass(species.getPerSpeciesBiomass() * species.getSpeciesCount());
            node.setHasLinks(false);
            nodes[i++] = node;
           
            List<ManipulatingParameter> params = this.getSystemParameter(species, timestep);           
            sysParamList.addAll(params);
        }
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        return response;
    }

    public void setCarryingCapacity(int timestep, int node_id, String manipulation_id, int value) {
        List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
        ManipulatingNode node = new ManipulatingNode();
        node.setTimestepIdx(timestep);
        node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
        node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
        node.setNodeIdx(node_id);
        node.setBeginingBiomass(2000);
        node.setHasLinks(false);
        nodes.add(node);

        List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
        setNodeParameter(node_id, ManipulatingParameterName.k.getManipulatingParameterIndex(), value, sParams);
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        updateSystemParameters(timestep, false, manipulation_id, sParams, nodes);
    }
   
    public void setParameter(int timestep, SpeciesZoneType species, String manipulation_id, short parameter, double value) {
        List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
        ManipulatingNode node = new ManipulatingNode();
        node.setTimestepIdx(timestep);
        node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
        node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
        node.setNodeIdx(species.getNodeIndex());
        node.setBeginingBiomass(species.getCurrentBiomass() / Constants.BIOMASS_SCALE);
        node.setHasLinks(false);
        nodes.add(node);

        List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

        if (parameter == Constants.PARAMETER_X) {
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    }

    public void setParameters(int timestep, String manipulation_id, HashMap<Short, Float> parameterList) {
        for (SpeciesZoneType szt : mSpecies.values()) {
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(timestep);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(szt.getNodeIndex());
            node.setBeginingBiomass(szt.getCurrentBiomass());
            node.setHasLinks(false);
            nodes.add(node);

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            if (szt.getType() == SpeciesTypeEnum.PLANT) {
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    }
//HJR
    public void setFunctionalParameters(int timestep, String manipulation_id, HashMap<Short, Float> parametersList, int parameterType, int predatorId) {
      for (SpeciesZoneType szt : mSpecies.values()) {
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(timestep);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(szt.getNodeIndex());
            node.setBeginingBiomass(szt.getCurrentBiomass());
            node.setHasLinks(false);
            nodes.add(node);

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            if (szt.getType() == SpeciesTypeEnum.PLANT) {
              if(parameterType == Constants.PARAMETER_X){
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            // Fruits and nectar, Grains and seeds, Grass and herbs,  Trees and shrubs, Leopard, Lion, Topi, Buffalo, Southern eland, Nile crocodile
            String manpId = this.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test4",0, 1, true);
           
           
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(500);
            node.setHasLinks(false);
            nodes.add(node);

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            this.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 1000, sParams);
            this.setLinkParameter(88, 5, ManipulatingParameterName.e.getManipulatingParameterIndex(), 0.8, sParams);
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            // Fruits and nectar, Grains and seeds, Grass and herbs,  Trees and shrubs, Leopard, Lion, Topi, Buffalo, Southern eland, Nile crocodile
            String manpId = this.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);
            System.out.println("manpId:"+manpId);
           
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(500);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(500);
            node.setHasLinks(false);
            nodes.add(node);
           
           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(80);
            node.setHasLinks(false);
            nodes.add(node);           
/*
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(100);
            node.setHasLinks(false);
            nodes.add(node);
*/           

           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(80);
            node.setBeginingBiomass(30);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId(propertiesConfig.getProperty("serengetiNetworkId"));           
            nodes.add(node);                  
           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            this.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 1000, sParams);
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            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);
            System.out.println("manpId:"+manpId);
           
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);
           
           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(100);
            node.setHasLinks(false);
            nodes.add(node);           

           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(80);
            node.setBeginingBiomass(5);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           
            nodes.add(node);                  
           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       
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            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);
            System.out.println("manpId:"+manpId);
           
            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();
            ManipulatingNode node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(4);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);


            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(5);
            node.setBeginingBiomass(2500);
            node.setHasLinks(false);
            nodes.add(node);
           
           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(73);
            node.setBeginingBiomass(100);
            node.setHasLinks(false);
            nodes.add(node);           

           
            node = new ManipulatingNode();
            node.setTimestepIdx(1);
            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion
            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model
            node.setNodeIdx(80);
            node.setBeginingBiomass(5);
            node.setHasLinks(false);
            node.setGameMode(true);           
            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           
            nodes.add(node);                  
           
           
            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();
            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.2, sParams);                       
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