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*/

*

* @author Paul

*/

   

   

   

        public String foodwebStabilityTest10_7(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73 };           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

           

           

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                           

   

       

        public String foodwebStabilityTest_4species_x73_08(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73 };           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

           

           

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                    

   

       

        public String foodwebStabilityTest_4species_x73_80_08(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73 };           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

  */       

            se.run(2, 18, manpId, false);

         

           

            return manpId;

        }           

       

       

        public String foodwebStabilityTest_4species_x73_02_80_02(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73 };           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.2, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.2, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

  

         

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }             

       

       public String foodwebStabilityTest_4species_4_R_08(SimulationEngine se)

        {

            int nodeList[] = { 4, 5};           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

*/

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.2, sParams);                       

            se.setNodeParameter(5, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.5, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.4, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

*/         

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                     

       

      

      

      public String foodwebStabilityTest_4species_x4_X02(SimulationEngine se)

        {

            int nodeList[] = { 4, 5};           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

*/

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.2, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.4, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

*/         

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                      

      

     

     

     

     public String foodwebStabilityTest_4species_73_4_PD_05(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73};           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setLinkParameter(73, 4, ManipulatingParameterName.d.getManipulatingParameterIndex(), 0.5, sParams);

//            se.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.2, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.4, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

*/         

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                  

     

    

          public String foodwebStabilityTest_4species_73_5_PD_05(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73};           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setLinkParameter(73, 5, ManipulatingParameterName.d.getManipulatingParameterIndex(), 0.5, sParams);

//            se.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.2, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.4, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

*/         

            se.run(2, 18, manpId, false);

         

            se.getBiomassInfo(manpId);

           

            return manpId;

        }                  

     

         

         public String foodwebStabilityTest_4species_73_4_5_PD_05(SimulationEngine se)

        {

            int nodeList[] = { 4, 5, 73};           

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, "sg10Test27",0, 1, true);

            System.out.println("manpId:"+manpId);

           

            List<ManipulatingNode> nodes = new ArrayList<ManipulatingNode>();

            ManipulatingNode node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(4);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(5);

            node.setBeginingBiomass(2500);

            node.setHasLinks(false);

            nodes.add(node);

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_PROLIFERATION.getManipulationActionType()); // proliferation

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(73);

            node.setBeginingBiomass(100);

            node.setHasLinks(false);

            nodes.add(node);           

           

            node = new ManipulatingNode();

            node.setTimestepIdx(1);

            node.setManipulationActionType(ManipulationActionType.SPECIES_INVASION.getManipulationActionType()); // invasion

            node.setModelType(ModelType.CASCADE_MODEL.getModelType()); // cascading model

            node.setNodeIdx(80);

            node.setBeginingBiomass(5);

            node.setHasLinks(false);

            node.setGameMode(true);           

            node.setOriginFoodwebId("74B9B375-1729-4516-A231-AE8A6114AACF");           

            nodes.add(node);                  

           

           

            List<ManipulatingParameter> sParams = new ArrayList<ManipulatingParameter>();

            se.setLinkParameter(73, 4, ManipulatingParameterName.d.getManipulatingParameterIndex(), 0.1, sParams);           

            se.setLinkParameter(73, 5, ManipulatingParameterName.d.getManipulatingParameterIndex(), 0.3, sParams);

//            se.setNodeParameter(4, ManipulatingParameterName.r.getManipulatingParameterIndex(), 0.2, sParams);           

            se.setNodeParameter(5, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);

            se.setNodeParameter(4, ManipulatingParameterName.k.getManipulatingParameterIndex(), 8000, sParams);           

           

            se.updateSystemParameters(1, false, manpId, sParams, nodes);

            nodes = new ArrayList<ManipulatingNode>();

            sParams = new ArrayList<ManipulatingParameter>();           

            se.setNodeParameter(80, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.8, sParams);                       

            se.setNodeParameter(73, ManipulatingParameterName.x.getManipulatingParameterIndex(), 0.4, sParams);           

            se.updateSystemParameters(2, false, manpId, sParams, nodes);           

*/         

            se.run(2, 18, manpId, false);

         

           

            return manpId;

        }                        

         

        

         public void testManipulationParameterInfoReqest(SimulationEngine se)

         {

             ManipulatingParameter[] params = se.getSystemParameterInfos("6A8C7654-EA53-415A-982F-00D7B208B906");

             for(ManipulatingParameter param : params)

             {

                 System.out.println("Name:" +param.getParamName() );                                                                   

                 System.out.println("Idx:" +param.getParamIdx() );                

                 System.out.println("Type:" +param.getParamType() );                

                 System.out.println("value:" +param.getParamValue() );                

                 System.out.println("TsIdx:" +param.getTimestepIdx() );                                                  

                 System.out.println("nodeIdx:" +param.getNodeIdx() );

                 if(param.getPredIdx() != -1)

                    System.out.println("pred:" +param.getPredIdx() );                                 

                 if(param.getPreyIdx() != -1)                

                    System.out.println("prey:" +param.getPreyIdx() );                                                  

                 System.out.println("=======================" );                                 

             }

         }

        

        

        

         public static boolean compareCSVFiles(String oldfileName, String newfileName)

         {

            

             BufferedReader oldreader = null;

             BufferedReader newreader = null;

             try

             {

                oldreader = new BufferedReader(new InputStreamReader(new FileInputStream(oldfileName),"US-ASCII"));

                newreader = new BufferedReader(new InputStreamReader(new FileInputStream(newfileName),"US-ASCII"));

                boolean firstline = true;

               

                while(true)

                {

                    String reader1Line = oldreader.readLine();

                    String reader2Line = newreader.readLine();

                    if(reader1Line == null)

                    {

                         if(reader2Line == null)

                         {

                            break;

                         }

                         else

                         {

                        //Error file 2 has more lines than file 1

                             oldreader.close();

                             newreader.close();           

                            return false;

                        }

                    }

                    else if(reader2Line == null && reader1Line != null)

                    {

                        //Error file 1 has more lines than file 2                   

                         oldreader.close();

                         newreader.close();           

                        return false;

                    }

                    String[] line1Parts = reader1Line.split(",");

                    String[] line2Parts = reader2Line.split(",");

                    if(line1Parts.length != line2Parts.length)

                    {

                         oldreader.close();

                         newreader.close();           

                        return false;

                    }

                        //error different number of entries in the two rows

                    if(!firstline)

                    {

                        for(int i = 0; i < line1Parts.length;i++)

                        {

                            if(line1Parts[i].length() == 0 && line2Parts[i].length() == 0)

                                continue;

                            double entry1 = Double.parseDouble(line1Parts[i]);

                            double entry2 = Double.parseDouble(line2Parts[i]);

                            double average = (entry1 + entry2) / 2;

                            if(Math.abs((entry1 - entry2) / average) > 0.03)

                            {

                                oldreader.close();

                                newreader.close();           

                                return false;

                             //Entries are too close.

                            }

                        }

                    }

                    else

                    {

                        firstline = false;

                    }

                }

                 oldreader.close();

                 newreader.close();           

             }

            catch(Exception e)

            {

                System.err.println("Error while comparing two csv file:" +e.getMessage());

            }

            return true;

         }

        

         private boolean testManipulationFunctionResultFile(String dir, String normalFile, String testFile)

         {

             boolean passed;

             

             passed = compareCSVFiles(dir+normalFile+".csv", testFile);

             if(!passed)

             {

                System.out.println(normalFile+" test failed");

                return false;

             }

             else

                System.out.println("passed "+normalFile+" test");

            

             return true;

         }

                

        

        public boolean masterTestFunction(String url)

        {

            boolean passed;

            SimulationEngine se = new SimulationEngine(url);            

//      SimulationEngine se = new SimulationEngine("http://localhost:41246/N3DWebService.svc?wsdl");                            

            String dir = "E:\\Project\\Beast\\data\\testData\\";

          

            // serengeti sub food web creation test

            int nodeList[] = {1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36};

            String serengetiFWName = "f1a55cx.8adfbbaav";

            String netId = se.createSeregenttiSubFoodweb(serengetiFWName, nodeList, true);

            if(netId == null)

            {

                System.out.println("error while creating food web");

                return false;

            }

            else

            {

                System.out.println("Serengeti sub foodweb creation passed");               

                se.deleteNetwork(netId);

            }

           

            serengetiFWName = "f2a55cx77.fdadaacdax";

            // simple manipulation creating and running test

            String manpId = se.createAndRunSeregenttiSubFoodweb(nodeList, serengetiFWName, 0, 10, true);

            if(netId == null)

            {

                System.out.println("error while creating manipulation");

                return false;

            }

            else

            {

                System.out.println("Simple manipulation creation passed");               

                se.deleteManipulation(manpId);

            }

           

          // test 'getBiomass' function

            passed = this.testGetBiomass(se, "testGetBiomass1");      

            if(passed)

            {

                System.out.println("getBiomass function test1 passed");                               

            }

            else

            {

                System.out.println("getBiomass function test1 failed");                                           

                return false;

            }

            this.testGetBiomass(se, "testGetBiomass2");      

            if(passed)

            {

                System.out.println("getBiomass function test2 passed");                               

            }

            else

            {

                System.out.println("getBiomass function test2 failed");                                           

                return false;

            }

            this.testGetBiomass(se, "testGetBiomass3");     

            if(passed)

            {

                System.out.println("getBiomass function test3 passed");                               

            }

            else

            {

                System.out.println("getBiomass function test3 failed");                                           

                return false;

            }           

*/           

            // adding 5 species (10, 11, 13, 14, 16 ) to manipulation in a row

            manpId = se.foodwebStabilityTest10_1_1();

            if(manpId == null)

            {

                System.out.println("error while adding species to manipulation");

                return false;

            }

            else

            {

                System.out.println("Adding 5 species to manipulation in a row passed");               

                se.deleteManipulation(manpId);

            }

           

            // adding 14 species to manipulation in a row           

            manpId = se.runningTest();

            if(manpId == null)

            {

                System.out.println("error while adding 14 species to manipulation");

                return false;

            }

            else

            {

                System.out.println("Adding 14 species to manipulation in a row passed");               

                se.deleteManipulation(manpId);

            }

           

            // test 'updateBiomass' function

            manpId = se.foodwebModelStabilityTest1();

            if(manpId == null)

            {

                System.out.println("error on testing updateBiomass");

                return false;

            }

            else

            {

                String normalFile = "updateBiomass";

                String testFile = dir+"test3.csv";