Package org.broadinstitute.gatk.tools.walkers.indels

Examples of org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreator$Event


    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());
      if (e instanceof ThrowEvent) {
        return false;
      }

      return true;
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());

      return e instanceof EndEvent;
    }
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());

      if (e instanceof BoundaryEvent) {
        BoundaryEvent be = (BoundaryEvent) e;
        return be.isCancelActivity();
      }
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());

      if (e instanceof BoundaryEvent) {
        BoundaryEvent be = (BoundaryEvent) e;
        return be.isCancelActivity();
      }
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());

      if (e instanceof BoundaryEvent) {
        BoundaryEvent be = (BoundaryEvent) e;
        return be.isCancelActivity();
      }
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());

      if (e instanceof IntermediateCatchEvent || e instanceof IntermediateThrowEvent) {
        return true;
      }
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    public boolean canCreate(ICreateContext context) {
      if (!super.canCreate(context)) {
        return false;
      }

      Event e = (Event) getBusinessObjectForPictogramElement(context.getTargetContainer());
      if (e instanceof ThrowEvent) {
        return false;
      }

      return true;
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      {
         throw new NotYetImplemented("Need to support multiple events at once...");
      }

      // since we currently don't support sending multiple events to process at once, assume there's only one
      Event event = events.get(0);

      eventInvocation.setName(event.getName());
      eventInvocation.setPayload(PayloadUtils.getPayloadAsSerializable(event));

      // Extensions
      processExtensionsFrom(eventParams.getClass(), eventParams.getExtensions());
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      }

      // events
      QName name = invocation.getName();
      Serializable payload = invocation.getPayload();
      Event event = WSRPTypeFactory.createEvent(name, payload);
      EventParams eventParams = WSRPTypeFactory.createEventParams(Collections.singletonList(event), WSRPUtils.getStateChangeFromAccessMode(accessMode));

      return WSRPTypeFactory.createHandleEvents(requestPrecursor.getRegistrationContext(), portletContext,
         requestPrecursor.getRuntimeContext(), requestPrecursor.getUserContext(), requestPrecursor.getMarkupParams(), eventParams);
   }
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      }

      // events
      QName name = invocation.getName();
      Serializable payload = invocation.getPayload();
      Event event = WSRPTypeFactory.createEvent(name, payload);
      EventParams eventParams = WSRPTypeFactory.createEventParams(Collections.singletonList(event), WSRPUtils.getStateChangeFromAccessMode(accessMode));
      eventParams.getExtensions().addAll(ExtensionAccess.getConsumerExtensionAccessor().getRequestExtensionsFor(EventParams.class));

      return WSRPTypeFactory.createHandleEvents(requestPrecursor.getRegistrationContext(), portletContext,
         requestPrecursor.getRuntimeContext(), requestPrecursor.getUserContext(), requestPrecursor.getMarkupParams(), eventParams);
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