Classes and Subpackages of org.broadinstitute.gatk.tools.walkers.indels

Package org.broadinstitute.gatk.tools.walkers.indels

All Classes in org.broadinstitute.gatk.tools.walkers.indels

org.broadinstitute.gatk.tools.walkers.indels.ConstrainedMateFixingManager
org.broadinstitute.gatk.tools.walkers.indels.ConstrainedMateFixingManager$SAMRecordHashObject
org.broadinstitute.gatk.tools.walkers.indels.ConstrainedMateFixingManagerUnitTest
org.broadinstitute.gatk.tools.walkers.indels.HaplotypeIndelErrorModel
org.broadinstitute.gatk.tools.walkers.indels.IndelRealigner
org.broadinstitute.gatk.tools.walkers.indels.IndelRealigner$AlignedRead
org.broadinstitute.gatk.tools.walkers.indels.IndelRealigner$Consensus
org.broadinstitute.gatk.tools.walkers.indels.IndelRealignerIntegrationTest
org.broadinstitute.gatk.tools.walkers.indels.IndelRealignerLargeScaleTest
org.broadinstitute.gatk.tools.walkers.indels.IndelRealignerUnitTest
org.broadinstitute.gatk.tools.walkers.indels.LeftAlignIndels
org.broadinstitute.gatk.tools.walkers.indels.PairHMMIndelErrorModel
org.broadinstitute.gatk.tools.walkers.indels.PairHMMIndelErrorModelUnitTest
org.broadinstitute.gatk.tools.walkers.indels.ReadBin
org.broadinstitute.gatk.tools.walkers.indels.ReadBinUnitTest
org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreator
org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreator$Event
org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreator$EventPair
org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreatorIntegrationTest
org.broadinstitute.gatk.tools.walkers.indels.RealignerTargetCreatorLargeScaleTest

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